U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Nipsnap nipsnap [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 32573, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Nipsnapprovided by FlyBase
    Official Full Name
    nipsnapprovided by FlyBase
    Primary source
    FLYBASE:FBgn0030724
    Locus tag
    Dmel_CG9212
    See related
    AllianceGenome:FB:FBgn0030724
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG9212; Dmel\CG9212
    Summary
    Predicted to be involved in mitochondrion organization and oxidative phosphorylation. Predicted to be located in mitochondrial outer membrane. Predicted to be active in mitochondrion. Is expressed in adult head; adult heart; embryonic/larval midgut; gastric caecum; and organism. Orthologous to human NIPSNAP1 (nipsnap homolog 1) and NIPSNAP2 (nipsnap homolog 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Nipsnap in Genome Data Viewer
    Location:
    14A7-14A8; 1-52 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (16070365..16073568, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (15964398..15967601, complement)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene defective proboscis extension response 18 Neighboring gene Transducer of ERBB2 Neighboring gene mir-4958 stem loop Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. NELF and GAGA factor are linked to promoter-proximal pausing at many genes in Drosophila. Lee C, et al. Mol Cell Biol, 2008 May. PMID 18332113, Free PMC Article
    2. Novel perspectives of target-binding by the evolutionarily conserved PP4 phosphatase. Karman Z, et al. Open Biol, 2020 Dec. PMID 33352067, Free PMC Article
    3. A cis-regulatory-directed pipeline for the identification of genes involved in cardiac development and disease. Nim HT, et al. Genome Biol, 2021 Dec 15. PMID 34906219, Free PMC Article
    4. The Extracellular and Cytoplasmic Domains of Syndecan Cooperate Postsynaptically to Promote Synapse Growth at the Drosophila Neuromuscular Junction. Nguyen MU, et al. PLoS One, 2016. PMID 26987116, Free PMC Article
    5. Regulators of autophagosome formation in Drosophila muscles. Zirin J, et al. PLoS Genet, 2015 Feb. PMID 25692684, Free PMC Article

    See all (30) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in mitochondrion organization ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in oxidative phosphorylation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrial outer membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    nipsnap
    Names
    CG9212-PA
    CG9212-PB
    CG9212-PC
    CG9212-PF
    Nipsnap-PA
    Nipsnap-PB
    Nipsnap-PC
    Nipsnap-PF

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      16070365..16073568 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_167484.3 → NP_727932.1  nipsnap, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_727932.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A4V4K8, Q9U5W0, Q9VXK0
      UniProtKB/TrEMBL
      M9PJP0
      Related
      FBpp0074034
      Conserved Domains (1) summary
      pfam07978
      Location:174 → 271
      NIPSNAP; NIPSNAP

    2. NM_132875.4 → NP_573103.1  nipsnap, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_573103.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A4V4K8, Q9U5W0, Q9VXK0
      UniProtKB/TrEMBL
      M9PJP0
      Related
      FBpp0074036
      Conserved Domains (1) summary
      pfam07978
      Location:174 → 271
      NIPSNAP; NIPSNAP

    3. NM_167483.3 → NP_727931.1  nipsnap, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_727931.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A4V4K8, Q9U5W0, Q9VXK0
      UniProtKB/TrEMBL
      M9PJP0
      Related
      FBpp0074035
      Conserved Domains (1) summary
      pfam07978
      Location:174 → 271
      NIPSNAP; NIPSNAP

    4. NM_001298387.1 → NP_001285316.1  nipsnap, isoform F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001285316.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A4V4K8, Q9U5W0, Q9VXK0
      UniProtKB/TrEMBL
      M9PJP0
      Conserved Domains (1) summary
      pfam07978
      Location:174 → 271
      NIPSNAP; NIPSNAP
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    M9PJP0 M9PJP0
    Q9VXK0.2 Q9VXK0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous