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    Slu7 Slu7 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 43427, updated on 9-Dec-2024

    Summary

    Official Symbol
    Slu7provided by FlyBase
    Official Full Name
    Slu7provided by FlyBase
    Primary source
    FLYBASE:FBgn0039626
    Locus tag
    Dmel_CG1420
    See related
    AllianceGenome:FB:FBgn0039626
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG1420; Dmel\CG1420; SLU7
    Summary
    Predicted to enable pre-mRNA 3'-splice site binding activity. Predicted to be involved in mRNA 3'-splice site recognition. Predicted to be located in nuclear speck. Predicted to be part of spliceosomal complex. Is expressed in organism. Orthologous to human SLU7 (SLU7 homolog, splicing factor). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See Slu7 in Genome Data Viewer
    Location:
    98F5-98F6; 3-97 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (29037058..29039071, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (24862780..24864793, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene antisense RNA:CR45044 Neighboring gene beta1,4-N-acetylgalactosaminyltransferase B Neighboring gene Strictosidine synthase-like 2 Neighboring gene Cleavage and polyadenylation specificity factor 100 Neighboring gene Protein C kinase 98E Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables pre-mRNA 3'-splice site binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables pre-mRNA 3'-splice site binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    involved_in RNA splicing IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in mRNA 3'-splice site recognition ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in mRNA splicing, via spliceosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nuclear speck ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    part_of spliceosomal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of spliceosomal complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 

    General protein information

    Preferred Names
    Slu7
    Names
    CG1420-PA
    Slu7-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      29037058..29039071 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_143402.4NP_651659.2  Slu7 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_651659.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q95RD1, Q9VAQ7
      UniProtKB/TrEMBL
      F3YDP8
      Related
      FBpp0084787
      Conserved Domains (1) summary
      pfam11708
      Location:160405
      Slu7; Pre-mRNA splicing Prp18-interacting factor