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    CG11178 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 32315, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG11178provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0030499
    Locus tag
    Dmel_CG11178
    See related
    AllianceGenome:FB:FBgn0030499
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG11178
    Summary
    Predicted to be involved in cell migration. Predicted to be located in recycling endosome. Predicted to be active in cytoplasm. Is expressed in organism. Orthologous to human AVL9 (AVL9 cell migration associated). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG11178 in Genome Data Viewer
    Location:
    12A8-12A8; 1-44 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (13605681..13609529)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (13499714..13503562)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene upheld Neighboring gene long non-coding RNA:CR44654 Neighboring gene Ndc80 Neighboring gene BthD selenoprotein Neighboring gene toothrin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Conserved microRNA targeting in Drosophila is as widespread in coding regions as in 3'UTRs. Schnall-Levin M, et al. Proc Natl Acad Sci U S A, 2010 Sep 7. PMID 20729470, Free PMC Article
    2. Evolution of secretin family GPCR members in the metazoa. Cardoso JC, et al. BMC Evol Biol, 2006 Dec 13. PMID 17166275, Free PMC Article
    3. A protein complex network of Drosophila melanogaster. Guruharsha KG, et al. Cell, 2011 Oct 28. PMID 22036573, Free PMC Article
    4. CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans. Wei P, et al. Genome Res, 2020 Jan. PMID 31722958, Free PMC Article
    5. Phylostratigraphic bias creates spurious patterns of genome evolution. Moyers BA, et al. Mol Biol Evol, 2015 Jan. PMID 25312911, Free PMC Article

    See all (23) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell migration ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in recycling endosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG11178-PB
    CG11178-PC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      13605681..13609529
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_167377.2 → NP_727720.1  uncharacterized protein Dmel_CG11178, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_727720.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VYB2
      Related
      FBpp0311349
      Conserved Domains (3) summary
      pfam07792
      Location:13 → 70
      Afi1; Docking domain of Afi1 for Arf3 in vesicle trafficking
      pfam08616
      Location:368 → 417
      SPA; Stabilization of polarity axis
      pfam09794
      Location:11 → 474
      Avl9; Transport protein Avl9

    2. NM_132673.3 → NP_572901.1  uncharacterized protein Dmel_CG11178, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_572901.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VYB2
      Related
      FBpp0073636
      Conserved Domains (3) summary
      pfam07792
      Location:13 → 70
      Afi1; Docking domain of Afi1 for Arf3 in vesicle trafficking
      pfam08616
      Location:368 → 417
      SPA; Stabilization of polarity axis
      pfam09794
      Location:11 → 474
      Avl9; Transport protein Avl9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VYB2 Q9VYB2

    Gene LinkOut

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