U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CG5004 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 32698, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CG5004provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0260748
    Locus tag
    Dmel_CG5004
    See related
    AllianceGenome:FB:FBgn0260748
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    anon-15Db; Dmel\CG5004
    Summary
    Human ortholog(s) of this gene implicated in osteogenesis imperfecta. Orthologous to several human genes including PHLDB1 (pleckstrin homology like domain family B member 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CG5004 in Genome Data Viewer
    Location:
    15E3-15E5; 1-57 cM
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (17107582..17135988)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (17001615..17030021)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Actin-related protein 2/3 complex, subunit 3B Neighboring gene ncRNA Neighboring gene meiotic 218 Neighboring gene meiotic 217 Neighboring gene Ribosomal protein S5a

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genome-guided transcript assembly by integrative analysis of RNA sequence data. Boley N, et al. Nat Biotechnol, 2014 Apr. PMID 24633242, Free PMC Article
    2. Single-Step Affinity Purification of ERK Signaling Complexes Using the Streptavidin-Binding Peptide (SBP) Tag. Yang L, et al. Methods Mol Biol, 2017. PMID 27924562, Free PMC Article
    3. Introgression in the Drosophila subobscura--D. Madeirensis sister species: evidence of gene flow in nuclear genes despite mitochondrial differentiation. Herrig DK, et al. Evolution, 2014 Mar. PMID 24152112, Free PMC Article
    4. Cloning of the Drosophila melanogaster meiotic recombination gene mei-218: a genetic and molecular analysis of interval 15E. McKim KS, et al. Genetics, 1996 Sep. PMID 8878687, Free PMC Article
    5. Landscape of protein-protein interactions in Drosophila immune deficiency signaling during bacterial challenge. Fukuyama H, et al. Proc Natl Acad Sci U S A, 2013 Jun 25. PMID 23749869, Free PMC Article

    See all (30) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein
    Names
    CG5004-PA
    CG5004-PB
    CG5004-PC
    CG5004-PD
    CG5004-PE
    CG5004-PF
    anon-15Db
    transcript b

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      17107582..17135988
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_132967.3 → NP_573195.1  uncharacterized protein Dmel_CG5004, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_573195.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VX80
      Related
      FBpp0074160
      Conserved Domains (3) summary
      pfam00169
      Location:1143 → 1237
      PH; PH domain
      pfam00498
      Location:41 → 104
      FHA; FHA domain
      cl17171
      Location:1142 → 1242
      PH-like; Pleckstrin homology-like domain

    2. NM_001201726.1 → NP_001188655.1  uncharacterized protein Dmel_CG5004, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001188655.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9MSQ1
      Conserved Domains (2) summary
      pfam00169
      Location:1043 → 1137
      PH; PH domain
      cl17171
      Location:1042 → 1142
      PH-like; Pleckstrin homology-like domain

    3. NM_001201725.2 → NP_001188654.1  uncharacterized protein Dmel_CG5004, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001188654.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9MSQ1
      Conserved Domains (2) summary
      pfam00169
      Location:1043 → 1137
      PH; PH domain
      cl17171
      Location:1042 → 1142
      PH-like; Pleckstrin homology-like domain

    4. NM_001316634.1 → NP_001303563.1  uncharacterized protein Dmel_CG5004, isoform F [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0S0X119
      Conserved Domains (2) summary
      pfam00169
      Location:117 → 211
      PH; PH domain
      cl17171
      Location:116 → 216
      PH-like; Pleckstrin homology-like domain

    5. NM_001201727.1 → NP_001188656.1  uncharacterized protein Dmel_CG5004, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001188656.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F3YDC5, M9MSF4
      Conserved Domains (2) summary
      pfam00169
      Location:224 → 318
      PH; PH domain
      cl17171
      Location:223 → 323
      PH-like; Pleckstrin homology-like domain

    6. NM_001298430.1 → NP_001285359.1  uncharacterized protein Dmel_CG5004, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001285359.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      X2JFU3
      Conserved Domains (2) summary
      pfam00169
      Location:173 → 267
      PH; PH domain
      cl17171
      Location:172 → 272
      PH-like; Pleckstrin homology-like domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0S0X119 A0A0S0X119
    M9MSF4 M9MSF4
    M9MSQ1 M9MSQ1
    Q9VX80 Q9VX80
    X2JFU3 X2JFU3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools