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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_033104.1 RefSeqGene
- Range
-
5040..207696
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001318520.2 → NP_001305449.1 rotatin isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate splice site and lacks an exon in its 5' UTR, and uses a downstream in-frame start codon, compared to variant 1. The encoded isoform (2) has a shorter N-terminus than isoform 1.
- Source sequence(s)
-
AC011930, AC021701, AK096404, AL117635, BC046222, BC143723
- UniProtKB/TrEMBL
-
A0A7I2V670
-
NM_173630.4 → NP_775901.3 rotatin isoform 1
See identical proteins and their annotated locations for NP_775901.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AC011930, AK096404, BC046222, BC047602, BF507420
- Consensus CDS
-
CCDS42443.1
- UniProtKB/Swiss-Prot
- Q68CS9, Q6ZRL8, Q6ZTK3, Q86TG4, Q86VV8, Q8N8N8, Q8TBQ4, Q96IN9, Q9UFJ4
- Related
- ENSP00000491507.1, ENST00000640769.2
- Conserved Domains (1) summary
-
- pfam14726
Location:16 → 112
- RTTN_N; Rotatin, an armadillo repeat protein, centriole functioning
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000018.10 Reference GRCh38.p14 Primary Assembly
- Range
-
70003031..70205687 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047437468.1 → XP_047293424.1 rotatin isoform X5
-
XM_017025693.2 → XP_016881182.1 rotatin isoform X3
-
XM_011525903.3 → XP_011524205.1 rotatin isoform X4
- Conserved Domains (1) summary
-
- pfam14726
Location:16 → 112
- RTTN_N; Rotatin, an armadillo repeat protein, centriole functioning
-
XM_011525902.3 → XP_011524204.1 rotatin isoform X2
- Conserved Domains (1) summary
-
- pfam14726
Location:16 → 112
- RTTN_N; Rotatin, an armadillo repeat protein, centriole functioning
-
XM_006722434.4 → XP_006722497.1 rotatin isoform X1
- Conserved Domains (1) summary
-
- pfam14726
Location:16 → 112
- RTTN_N; Rotatin, an armadillo repeat protein, centriole functioning
-
XM_017025694.2 → XP_016881183.1 rotatin isoform X7
-
XM_017025695.2 → XP_016881184.1 rotatin isoform X9
-
XM_011525906.3 → XP_011524208.1 rotatin isoform X11
-
XM_047437471.1 → XP_047293427.1 rotatin isoform X15
- UniProtKB/TrEMBL
-
A0A7I2V670
-
XM_006722435.4 → XP_006722498.1 rotatin isoform X6
- Conserved Domains (1) summary
-
- pfam14726
Location:16 → 112
- RTTN_N; Rotatin, an armadillo repeat protein, centriole functioning
-
XM_011525904.4 → XP_011524206.1 rotatin isoform X8
- Conserved Domains (1) summary
-
- pfam14726
Location:16 → 112
- RTTN_N; Rotatin, an armadillo repeat protein, centriole functioning
-
XM_011525905.3 → XP_011524207.1 rotatin isoform X10
- Conserved Domains (1) summary
-
- pfam14726
Location:16 → 112
- RTTN_N; Rotatin, an armadillo repeat protein, centriole functioning
-
XM_011525907.3 → XP_011524209.1 rotatin isoform X12
- Conserved Domains (1) summary
-
- pfam14726
Location:16 → 112
- RTTN_N; Rotatin, an armadillo repeat protein, centriole functioning
-
XM_047437469.1 → XP_047293425.1 rotatin isoform X13
-
XM_047437470.1 → XP_047293426.1 rotatin isoform X14
RNA
-
XR_430072.4 RNA Sequence
- Related
-
ENST00000581161.5
-
XR_007066140.1 RNA Sequence
- Related
-
ENST00000638251.1
Alternate T2T-CHM13v2.0
Genomic
-
NC_060942.1 Alternate T2T-CHM13v2.0
- Range
-
70220081..70422743 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054318481.1 → XP_054174456.1 rotatin isoform X5
-
XM_054318479.1 → XP_054174454.1 rotatin isoform X3
-
XM_054318480.1 → XP_054174455.1 rotatin isoform X4
-
XM_054318478.1 → XP_054174453.1 rotatin isoform X2
-
XM_054318477.1 → XP_054174452.1 rotatin isoform X1
-
XM_054318485.1 → XP_054174460.1 rotatin isoform X16
-
XM_054318483.1 → XP_054174458.1 rotatin isoform X7
-
XM_054318486.1 → XP_054174461.1 rotatin isoform X16
-
XM_054318487.1 → XP_054174462.1 rotatin isoform X9
-
XM_054318489.1 → XP_054174464.1 rotatin isoform X11
-
XM_054318493.1 → XP_054174468.1 rotatin isoform X15
- UniProtKB/TrEMBL
-
A0A7I2V670
-
XM_054318482.1 → XP_054174457.1 rotatin isoform X6
-
XM_054318484.1 → XP_054174459.1 rotatin isoform X8
-
XM_054318488.1 → XP_054174463.1 rotatin isoform X10
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XM_054318490.1 → XP_054174465.1 rotatin isoform X12
-
XM_054318491.1 → XP_054174466.1 rotatin isoform X13
-
XM_054318492.1 → XP_054174467.1 rotatin isoform X14
RNA
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XR_008484995.1 RNA Sequence
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XR_008484996.1 RNA Sequence