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    LINC02712 long intergenic non-protein coding RNA 2712 [ Homo sapiens (human) ]

    Gene ID: 101929497, updated on 22-Oct-2024

    Summary

    Official Symbol
    LINC02712provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2712provided by HGNC
    Primary source
    HGNC:HGNC:54229
    See related
    Ensembl:ENSG00000273409 AllianceGenome:HGNC:54229
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02712 in Genome Data Viewer
    Location:
    11q24.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (127271070..127337033)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (127304082..127370018)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (127140965..127206928)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369562 Neighboring gene uncharacterized LOC107984379 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr11:127180643-127181842 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:127190865-127191395 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_19685 Neighboring gene MPRA-validated peak1506 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:127262370-127262928 Neighboring gene RN7SK pseudogene 121 Neighboring gene RN7SK pseudogene 279

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_120580.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC030092, DB487307
      Related
      ENST00000608214.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      127271070..127337033
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      127304082..127370018
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)