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    LINC01566 long intergenic non-protein coding RNA 1566 [ Homo sapiens (human) ]

    Gene ID: 283914, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC01566provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1566provided by HGNC
    Primary source
    HGNC:HGNC:27555
    See related
    Ensembl:ENSG00000259841 AllianceGenome:HGNC:27555
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC01566 in Genome Data Viewer
    Location:
    16p11.1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (35363416..35391713)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (38737216..38765514, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (34597787..34626084)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene angiogenic factor with G-patch and FHA domains 1 pseudogene 9 Neighboring gene chromosome 2 open reading frame 69 pseudogene 4 Neighboring gene FSHD region gene 2 family member G, pseudogene Neighboring gene angiogenic factor with G-patch and FHA domains 1 pseudogene 4 Neighboring gene uncharacterized LOC105371201 Neighboring gene FSHD region gene 2 family member I, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. FOSL1-mediated LINC01566 negatively regulates CD4(+) T-cell activation in myasthenia gravis. Li L, et al. J Neuroinflammation, 2024 Aug 7. PMID 39113081, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. FOSL1-mediated LINC01566 negatively regulates CD4[+] T-cell activation in myasthenia gravis.
      Title: FOSL1-mediated LINC01566 negatively regulates CD4(+) T-cell activation in myasthenia gravis.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See Variation Viewer (GRCh37.p13)

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027079.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      BC045579
      Related
      ENST00000569242.1

    2. NR_027080.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains multiple differences at both ends and in the internal exons, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AC007353, BC038774

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      35363416..35391713
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      38737216..38765514 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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