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    LINC01346 long intergenic non-protein coding RNA 1346 [ Homo sapiens (human) ]

    Gene ID: 728716, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01346provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1346provided by HGNC
    Primary source
    HGNC:HGNC:50563
    See related
    AllianceGenome:HGNC:50563
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC01346 in Genome Data Viewer
    Location:
    1p36.32
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (3940612..3952583)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (3452532..3464503)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (4000672..4012643)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 128 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:3815928-3816498 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:3816499-3817067 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:3817068-3817637 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 130 Neighboring gene chromosome 1 open reading frame 174 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 131 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:3827787-3828672 Neighboring gene long intergenic non-protein coding RNA 1134 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4015013-4015738 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:4017862-4018398 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:4018399-4018934 Neighboring gene long intergenic non-protein coding RNA 1345 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4037314-4037814 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4037815-4038315 Neighboring gene long intergenic non-protein coding RNA 2780 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4071131-4071631 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4086572-4087072 Neighboring gene Neanderthal introgressed variant-containing enhancers experimental_7992 and experimental_7995 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:4093716-4094491 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4118474-4118974 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4118975-4119475 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:4170302-4171501 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4178536-4179040 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4179041-4179543 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:4197352-4197952 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4212141-4212642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4212643-4213142 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:4233037-4233538 Neighboring gene eukaryotic translation elongation factor 1 delta pseudogene 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040065.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK124708, AL928679, DB288420

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      3940612..3952583
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      3452532..3464503
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)