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    BHLHE22-AS1 BHLHE22 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 401463, updated on 10-Dec-2024

    Summary

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    Official Symbol
    BHLHE22-AS1provided by HGNC
    Official Full Name
    BHLHE22 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:56147
    See related
    Ensembl:ENSG00000254102 AllianceGenome:HGNC:56147
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See BHLHE22-AS1 in Genome Data Viewer
    Location:
    8q12.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (64574308..64581892, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (64999726..65007314, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (65486865..65494449, complement)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene MIR124-2 host gene Neighboring gene microRNA 124-2 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:65322543-65323742 Neighboring gene cytochrome c oxidase subunit NDUFA4-like Neighboring gene uncharacterized LOC124900252 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27455 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:65499285-65499928 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:65499929-65500572 Neighboring gene NANOG hESC enhancer GRCh37_chr8:65522320-65522853 Neighboring gene basic helix-loop-helix family member e22 Neighboring gene cytochrome P450 family 7 subfamily B member 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27456 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27457 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19243 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19244 Neighboring gene uncharacterized LOC105375879 Neighboring gene uncharacterized LOC105375878

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_015374.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC090136, AK097150, BC022555, BC068582
      Related
      ENST00000520834.1

    2. NR_152770.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK097150, BC022555, DN995086
      Related
      ENST00000517909.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      64574308..64581892 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      64999726..65007314 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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