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    PARAIL palmitic acid regulated anti-inflammatory lncRNA [ Homo sapiens (human) ]

    Gene ID: 101929709, updated on 10-Dec-2024

    Summary

    Official Symbol
    PARAILprovided by HGNC
    Official Full Name
    palmitic acid regulated anti-inflammatory lncRNAprovided by HGNC
    Primary source
    HGNC:HGNC:55545
    See related
    Ensembl:ENSG00000251136 AllianceGenome:HGNC:55545
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    RIPK2-DT
    Expression
    Ubiquitous expression in gall bladder (RPKM 1.9), prostate (RPKM 1.8) and 25 other tissues See more
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    Genomic context

    See PARAIL in Genome Data Viewer
    Location:
    8q21.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (89717399..89757711, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (90840572..90880871, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (90729627..90769939, complement)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene LINE-1 retrotransposable element ORF2 protein-like Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:90547639-90548190 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27599 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:90623836-90625035 Neighboring gene uncharacterized LOC112268015 Neighboring gene NANOG hESC enhancer GRCh37_chr8:90737932-90738481 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27603 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19344 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:90749405-90749994 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19345 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27604 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27605 Neighboring gene receptor interacting serine/threonine kinase 2 Neighboring gene MPRA-validated peak7102 silencer Neighboring gene MPRA-validated peak7103 silencer Neighboring gene cytochrome c oxidase subunit 6B1 pseudogene 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125822.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AF117829
      Related
      ENST00000504145.7

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      89717399..89757711 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      90840572..90880871 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)