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    trp1322 TRP-like ion channel protein [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539071, updated on 18-Sep-2024

    Summary

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    Official Symbol
    trp1322
    Official Full Name
    TRP-like ion channel protein
    Primary source
    PomBase:SPCC1322.03
    Locus tag
    SPOM_SPCC1322.03
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See trp1322 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    1
    Sequence:
    Chromosome: III; NC_003421.2 (1287890..1291811)

    Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene 3' ssRNA-specific 3'-to-5' exonuclease Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene protein Pdx1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene UTP-glucose-1-phosphate uridylyltransferase Neighboring gene aminopeptidase Lap2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003421.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Studies on the roles of clathrin-mediated membrane trafficking and zinc transporter Cis4 in the transport of GPI-anchored proteins in fission yeast. Jaiseng W, et al. PLoS One, 2012. PMID 22848669, Free PMC Article
    2. Transient receptor potential (TRP) and Cch1-Yam8 channels play key roles in the regulation of cytoplasmic Ca2+ in fission yeast. Ma Y, et al. PLoS One, 2011. PMID 21811607, Free PMC Article
    3. Yeast X-chromosome-associated protein 5 (Xap5) functions with H2A.Z to suppress aberrant transcripts. Anver S, et al. EMBO Rep, 2014 Aug. PMID 24957674, Free PMC Article
    4. A central role for TOR signalling in a yeast model for juvenile CLN3 disease. Bond ME, et al. Microb Cell, 2015 Nov 11. PMID 28357272, Free PMC Article
    5. Yeast SREBP cleavage activation requires the Golgi Dsc E3 ligase complex. Stewart EV, et al. Mol Cell, 2011 Apr 22. PMID 21504829, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables calcium channel activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion import across plasma membrane IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in Golgi apparatus HDA PubMed 
    is_active_in cytoplasm HDA PubMed 
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    TRP-like ion channel protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003421.2 Reference assembly

      Range
      1287890..1291811
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001023121.3 → NP_588131.1  TRP-like ion channel protein [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_588131.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O94543
      Conserved Domains (2) summary
      pfam06011
      Location:330 → 565
      TRP; Transient receptor potential (TRP) ion channel
      pfam14558
      Location:32 → 178
      TRP_N; ML-like domain
    Nucleotide Protein
    Heading Accession and Version

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