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    puf1 RNA-binding protein [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2540913, updated on 18-Sep-2024

    Summary

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    Official Symbol
    puf1
    Official Full Name
    RNA-binding protein
    Primary source
    PomBase:SPBC56F2.08c
    Locus tag
    SPOM_SPBC56F2.08C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See puf1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    1
    Sequence:
    Chromosome: II; NC_003423.3 (4096930..4100074)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene arginine specific carbamoyl-phosphate synthase subunit Arg5 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ribosome biogenesis factor recycling AAA family ATPase Neighboring gene ncRNA Neighboring gene protein tam13

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Distinct RNA-binding modules in a single PUF protein cooperate to determine RNA specificity. Qiu C, et al. Nucleic Acids Res, 2019 Sep 19. PMID 31294800, Free PMC Article
    2. Fission Yeast Puf2, a Pumilio and FBF Family RNA-Binding Protein, Links Stress Granules to Processing Bodies. Hsiao WY, et al. Mol Cell Biol, 2020 Apr 13. PMID 32071154, Free PMC Article
    3. Posttranslational Arginylation Enzyme Arginyltransferase1 Shows Genetic Interactions With Specific Cellular Pathways in vivo. Wiley DJ, et al. Front Physiol, 2020. PMID 32435206, Free PMC Article
    4. SIN-inhibitory phosphatase complex promotes Cdc11p dephosphorylation and propagates SIN asymmetry in fission yeast. Singh NS, et al. Curr Biol, 2011 Dec 6. PMID 22119525, Free PMC Article
    5. Large scale screening of genetic interaction with sgf73(+) in fission yeast. Guo Y, et al. Yi Chuan, 2014 Jul. PMID 25076038

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Distinct RNA-binding modules in a single PUF1 protein cooperate to determine RNA specificity in Schizosaccharomyces pombe.
      Title: Distinct RNA-binding modules in a single PUF protein cooperate to determine RNA specificity.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables mRNA 3'-UTR AU-rich region binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables mRNA 3'-UTR AU-rich region binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in P-body EXP
    Inferred from Experiment
    more info
    		 PubMed 
    is_active_in P-body IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in cytoplasm HDA PubMed 
    is_active_in cytoplasmic stress granule EXP
    Inferred from Experiment
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      4096930..4100074
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001022634.3 → NP_596709.1  RNA-binding protein [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_596709.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O60059
      Conserved Domains (2) summary
      cd12340
      Location:1 → 71
      RBD_RRM1_NPL3; RNA recognition motif 1 in yeast nucleolar protein 3 (Npl3p) and similar proteins
      cl21719
      Location:169 → 428
      Pumilio; Pumilio-family RNA binding domain
    Nucleotide Protein
    Heading Accession and Version

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