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    sec2302 COPII cargo receptor subunit Sec23b [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2541164, updated on 18-Sep-2024

    Summary

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    Official Symbol
    sec2302
    Official Full Name
    COPII cargo receptor subunit Sec23b
    Primary source
    PomBase:SPBC776.04
    Locus tag
    SPOM_SPBC776.04
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    sec23-b
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    Genomic context

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    See sec2302 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    4
    Sequence:
    Chromosome: II; NC_003423.3 (3178553..3181338)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene serine/threonine protein phosphatase PP1 catalytic subunit Dis2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene homoserine dehydrogenase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Arf3/6 docking factor Neighboring gene transporter

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
    2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    3. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
    4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
    5. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans. Lang BF. EMBO J, 1984 Sep. PMID 6092057, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables GTPase activator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables zinc ion binding ISM
    Inferred from Sequence Model
    more info
    		  
    Process Evidence Code Pubs
    involved_in COPII-coated vesicle cargo loading IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in ERAD pathway ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in intracellular protein transport IC
    Inferred by Curator
    more info
    		  
    Component Evidence Code Pubs
    part_of COPII vesicle coat IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in cytosol HDA PubMed 
    is_active_in endoplasmic reticulum exit site IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    COPII cargo receptor subunit Sec23b

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      3178553..3181338
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001022241.3 → NP_596319.1  COPII cargo receptor subunit Sec23b [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_596319.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O94672
      Conserved Domains (6) summary
      cd11287
      Location:610 → 730
      Sec23_C; C-terminal Actin depolymerization factor-homology domain of Sec23
      COG5047
      Location:1 → 765
      SEC23; Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]
      cd01478
      Location:120 → 388
      Sec23-like; Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes ...
      pfam04810
      Location:53 → 89
      zf-Sec23_Sec24; Sec23/Sec24 zinc finger
      pfam04815
      Location:530 → 614
      Sec23_helical; Sec23/Sec24 helical domain
      pfam08033
      Location:401 → 504
      Sec23_BS; Sec23/Sec24 beta-sandwich domain
    Nucleotide Protein
    Heading Accession and Version

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