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    gdh1 NADP-specific glutamate dehydrogenase Gdh1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539147, updated on 18-Sep-2024

    Summary

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    Official Symbol
    gdh1
    Official Full Name
    NADP-specific glutamate dehydrogenase Gdh1
    Primary source
    PomBase:SPCC622.12c
    Locus tag
    SPOM_SPCC622.12C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See gdh1 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    1
    Sequence:
    Chromosome: III; NC_003421.2 (1419131..1421203, complement)

    Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene exocyst complex subunit Sec5 Neighboring gene ncRNA Neighboring gene plasma membrane LMBR1-like multi-pass membrane protein, human LMBRD2 ortholog, implicated in signaling Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene TTT co-chaperone complex, armadillo-type fold subunit Tti1 Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003421.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The enzymes of ammonia assimilation in Schizosaccharomyces spp. and in Saccharomycodes ludwigii. Johnson B, et al. J Gen Microbiol, 1974 Nov. PMID 4154968
    2. Filamentous invasive growth of mutants of the genes encoding ammonia-metabolizing enzymes in the fission yeast Schizosaccharomyces pombe. Sasaki Y, et al. PLoS One, 2017. PMID 28982178, Free PMC Article
    3. Proximity-dependent biotinylation mediated by TurboID to identify protein-protein interaction networks in yeast. Larochelle M, et al. J Cell Sci, 2019 May 31. PMID 31064814
    4. Expanded Interactome of the Intrinsically Disordered Protein Dss1. Schenstrøm SM, et al. Cell Rep, 2018 Oct 23. PMID 30355493, Free PMC Article
    5. Yeast X-chromosome-associated protein 5 (Xap5) functions with H2A.Z to suppress aberrant transcripts. Anver S, et al. EMBO Rep, 2014 Aug. PMID 24957674, Free PMC Article

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables glutamate dehydrogenase (NADP+) activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables glutamate dehydrogenase (NADP+) activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-glutamate biosynthetic process EXP
    Inferred from Experiment
    more info
    		 PubMed 
    involved_in ammonia assimilation cycle IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in glutamate biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol HDA PubMed 
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    NADP-specific glutamate dehydrogenase Gdh1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003421.2 Reference assembly

      Range
      1419131..1421203 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001023174.3 → NP_588184.1  NADP-specific glutamate dehydrogenase Gdh1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_588184.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P78804
      Conserved Domains (3) summary
      cd05313
      Location:180 → 449
      NAD_bind_2_Glu_DH; NAD(P) binding domain of glutamate dehydrogenase, subgroup 2
      PRK09414
      Location:4 → 448
      PRK09414; glutamate dehydrogenase; Provisional
      pfam02812
      Location:42 → 170
      ELFV_dehydrog_N; Glu/Leu/Phe/Val dehydrogenase, dimerization domain
    Nucleotide Protein
    Heading Accession and Version

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