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    ypt4 GTPase Ypt4 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2542113, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ypt4
    Official Full Name
    GTPase Ypt4
    Primary source
    PomBase:SPAC1B3.11c
    Locus tag
    SPOM_SPAC1B3.11C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See ypt4 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    2
    Sequence:
    Chromosome: I; NC_003424.3 (4948541..4950112, complement)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene Noc2-Noc3 complex subunit Neighboring gene ncRNA Neighboring gene protein Hrd302 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DNA-directed RNA polymerase subunit Rpb10 Neighboring gene U3 snoRNP-associated protein Nan1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Ypt4 and lvs1 regulate vacuolar size and function in Schizosaccharomyces pombe. Rains A, et al. Cell Logist, 2017. PMID 28944093, Free PMC Article
    2. Phosphorylation of the RNA-binding protein Zfs1 modulates sexual differentiation in fission yeast. Navarro FJ, et al. J Cell Sci, 2017 Dec 15. PMID 29084823, Free PMC Article
    3. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
    4. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    5. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables GTP binding ISM
    Inferred from Sequence Model
    more info
    		  
    enables GTPase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in exocytosis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of intracellular protein transport IC
    Inferred by Curator
    more info
    		  
    involved_in regulation of vesicle-mediated transport ISM
    Inferred from Sequence Model
    more info
    		  
    involved_in signaling NAS
    Non-traceable Author Statement
    more info
    		  
    involved_in vacuole organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cytosol HDA PubMed 
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    GTPase Ypt4

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      4948541..4950112 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001020224.3 → NP_594796.1  GTPase Ypt4 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_594796.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O13876
      Conserved Domains (2) summary
      smart00175
      Location:10 → 178
      RAB; Rab subfamily of small GTPases
      cd00154
      Location:10 → 173
      Rab; Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)
    Nucleotide Protein
    Heading Accession and Version

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