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    glycosyl hydrolase family 3 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2540167, updated on 18-Sep-2024

    Summary

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    Official Full Name
    glycosyl hydrolase family 3
    Primary source
    PomBase:SPBC1683.04
    Locus tag
    SPOM_SPBC1683.04
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    Location:
    chromosome: II
    Exon count:
    1
    Sequence:
    Chromosome: II; NC_003423.3 (142412..145393)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
    2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    3. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
    4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
    5. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans. Lang BF. EMBO J, 1984 Sep. PMID 6092057, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables beta-glucosidase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in cellular catabolic process NAS
    Non-traceable Author Statement
    more info
    		  
    involved_in glucan catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    glycosyl hydrolase family 3

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      142412..145393
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001020966.3 → NP_595060.1  glycosyl hydrolase family 3 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_595060.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q9P6J6
      Conserved Domains (5) summary
      COG1472
      Location:25 → 380
      BglX; Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism]
      pfam01915
      Location:545 → 666
      Glyco_hydro_3_C; Glycosyl hydrolase family 3 C-terminal domain
      pfam07691
      Location:398 → 544
      PA14; PA14 domain
      pfam14310
      Location:741 → 811
      Fn3-like; Fibronectin type III-like domain
      cl07971
      Location:4 → 280
      Glyco_hydro_3; Glycosyl hydrolase family 3 N terminal domain
    Nucleotide Protein
    Heading Accession and Version

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