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    rpb10 DNA-directed RNA polymerase subunit Rpb10 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2542233, updated on 18-Sep-2024

    Summary

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    Official Symbol
    rpb10
    Official Full Name
    DNA-directed RNA polymerase subunit Rpb10
    Primary source
    PomBase:SPAC1B3.12c
    Locus tag
    SPOM_SPAC1B3.12C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See rpb10 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    3
    Sequence:
    Chromosome: I; NC_003424.3 (4950341..4951286, complement)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene protein Hrd302 Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene GTPase Ypt4 Neighboring gene ncRNA Neighboring gene U3 snoRNP-associated protein Nan1 Neighboring gene vitamin H transporter Neighboring gene V-type ATPase V0 subunit c (proteolipid subunit)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. [Cloning of cDNA for RNA polymerase subunit from the fission yeast Schizosaccharomyces pombe by heterospecific complementation in Saccharomyces cerevisiae]. Shpakovskiĭ GV, et al. Bioorg Khim, 1997 Feb. PMID 9157844
    2. Hub1 is an essential ubiquitin-like protein without functioning as a typical modifier in fission yeast. Yashiroda H, et al. Genes Cells, 2004 Dec. PMID 15569151
    3. A screen for genes involved in respiration control and longevity in Schizosaccharomyces pombe. Roux AE, et al. Ann N Y Acad Sci, 2010 Jun. PMID 20536828
    4. Location of subunit-subunit contact sites on RNA polymerase II subunit 3 from the fission yeast Schizosaccharomyces pombe. Yasui K, et al. Biochemistry, 1998 Apr 21. PMID 9548938
    5. Gene organization and protein sequence of the small subunits of Schizosaccharomyces pombe RNA polymerase II. Sakurai H, et al. Gene, 1997 Sep 1. PMID 9322754

    See all (26) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    contributes_to DNA-directed 5'-3' RNA polymerase activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    contributes_to RNA polymerase I activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    contributes_to RNA polymerase II activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    contributes_to RNA polymerase III activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables zinc ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in tRNA transcription by RNA polymerase III IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in transcription by RNA polymerase I IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in transcription by RNA polymerase I IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in transcription by RNA polymerase II IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in transcription by RNA polymerase III IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in transcription elongation by RNA polymerase I EXP
    Inferred from Experiment
    more info
    		 PubMed 
    involved_in transcription initiation at RNA polymerase II promoter IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase I complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of RNA polymerase I complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of RNA polymerase I complex IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    part_of RNA polymerase II, core complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of RNA polymerase II, core complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of RNA polymerase II, core complex IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    part_of RNA polymerase II, holoenzyme EXP
    Inferred from Experiment
    more info
    		 PubMed 
    part_of RNA polymerase III complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of RNA polymerase III complex IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    is_active_in cytosol HDA PubMed 
    is_active_in nucleolus HDA PubMed 
    is_active_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    DNA-directed RNA polymerase subunit Rpb10

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      4950341..4951286 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001020225.3 → NP_594797.1  DNA-directed RNA polymerase subunit Rpb10 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_594797.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O13877, O14458
      Conserved Domains (1) summary
      PLN00032
      Location:1 → 70
      PLN00032; DNA-directed RNA polymerase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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