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    ypt1 GTPase Ypt1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539784, updated on 18-Sep-2024

    Summary

    Official Symbol
    ypt1
    Official Full Name
    GTPase Ypt1
    Primary source
    PomBase:SPBC1703.10
    Locus tag
    SPOM_SPBC1703.10
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

    See ypt1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    5
    Sequence:
    Chromosome: II; NC_003423.3 (2932965..2934291)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ATP citrate synthase subunit 1 Neighboring gene ncRNA Neighboring gene 5-formyltetrahydrofolate cyclo-ligase Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene mitochondrial outer membrane lipid metabolism regulator Opa3 Neighboring gene ubiquitin hydrolase Ubp9

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables GTPase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables GTPase activity IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in autophagosome assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in intracellular protein transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in Golgi membrane ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in cytosol HDA PubMed 
    is_active_in endomembrane system IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in endoplasmic reticulum membrane ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus HDA PubMed 
    is_active_in phagophore assembly site membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      2932965..2934291
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001022124.3NP_596205.1  GTPase Ypt1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_596205.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P11620
      Conserved Domains (2) summary
      smart00175
      Location:9172
      RAB; Rab subfamily of small GTPases
      cd01869
      Location:7172
      Rab1_Ypt1; Rab GTPase family 1 includes the yeast homolog Ypt1