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    sdj1 glyoxylase III Sdj1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2541772, updated on 18-Sep-2024

    Summary

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    Official Symbol
    sdj1
    Official Full Name
    glyoxylase III Sdj1
    Primary source
    PomBase:SPAC22E12.03c
    Locus tag
    SPOM_SPAC22E12.03C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    hsp3106; spDJ-1
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    Genomic context

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    See sdj1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    2
    Sequence:
    Chromosome: I; NC_003424.3 (5022786..5023851, complement)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene phosphoenolpyruvate transmembrane transporter Pet3 Neighboring gene ncRNA Neighboring gene splicing factor, WW domain -binding Rbm42 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene superoxide dismutase Cu chaperone Ccs1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Two-step Protein Quality Control Pathway for a Misfolded DJ-1 Variant in Fission Yeast. Mathiassen SG, et al. J Biol Chem, 2015 Aug 21. PMID 26152728, Free PMC Article
    2. Yeast X-chromosome-associated protein 5 (Xap5) functions with H2A.Z to suppress aberrant transcripts. Anver S, et al. EMBO Rep, 2014 Aug. PMID 24957674, Free PMC Article
    3. Identification of glutathione (GSH)-independent glyoxalase III from Schizosaccharomyces pombe. Zhao Q, et al. BMC Evol Biol, 2014 Apr 23. PMID 24758716, Free PMC Article
    4. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    5. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables glyoxalase III activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular detoxification NAS
    Non-traceable Author Statement
    more info
    		  
    involved_in glyoxal metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in response to oxidative stress IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in cytosol HDA PubMed 
    is_active_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus HDA PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glyoxylase III Sdj1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      5022786..5023851 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001020258.3 → NP_594829.1  glyoxylase III Sdj1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_594829.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q10356
      Conserved Domains (2) summary
      TIGR01383
      Location:3 → 186
      not_thiJ; DJ-1 family protein
      pfam01965
      Location:2 → 174
      DJ-1_PfpI; DJ-1/PfpI family
    Nucleotide Protein
    Heading Accession and Version

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