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    sec5 exocyst complex subunit Sec5 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539341, updated on 18-Sep-2024

    Summary

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    Official Symbol
    sec5
    Official Full Name
    exocyst complex subunit Sec5
    Primary source
    PomBase:SPCC622.10c
    Locus tag
    SPOM_SPCC622.10C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    exo2
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    Genomic context

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    See sec5 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    2
    Sequence:
    Chromosome: III; NC_003421.2 (1413420..1416194, complement)

    Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene histone H2A alpha Neighboring gene histone H2B Htb1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene plasma membrane LMBR1-like multi-pass membrane protein, human LMBRD2 ortholog, implicated in signaling Neighboring gene ncRNA Neighboring gene NADP-specific glutamate dehydrogenase Gdh1 Neighboring gene TTT co-chaperone complex, armadillo-type fold subunit Tti1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003421.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Predicting the fission yeast protein interaction network. Pancaldi V, et al. G3 (Bethesda), 2012 Apr. PMID 22540037, Free PMC Article
    2. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
    3. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    4. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
    5. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in Golgi to plasma membrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in exocytosis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in vesicle tethering involved in exocytosis IC
    Inferred by Curator
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cell division site HDA PubMed 
    is_active_in cell tip HDA PubMed 
    part_of exocyst IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    exocyst complex subunit Sec5

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003421.2 Reference assembly

      Range
      1413420..1416194 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001023172.3 → NP_588182.1  exocyst complex subunit Sec5 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_588182.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O94598
      Conserved Domains (1) summary
      pfam15469
      Location:139 → 329
      Sec5; Exocyst complex component Sec5
    Nucleotide Protein
    Heading Accession and Version

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