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    red1 protein Red1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2543254, updated on 18-Sep-2024

    Summary

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    Official Symbol
    red1
    Official Full Name
    protein Red1
    Primary source
    PomBase:SPAC1006.03c
    Locus tag
    SPOM_SPAC1006.03C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    iss3
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    Genomic context

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    See red1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    4
    Sequence:
    Chromosome: I; NC_003424.3 (5070931..5073898, complement)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene serine protease Psp3 Neighboring gene ASTRA-associated protein 1 Asa1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene protein mcp3 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Meiotic gene silencing complex MTREC/NURS recruits the nuclear exosome to YTH-RNA-binding protein Mmi1. Shichino Y, et al. PLoS Genet, 2020 Feb. PMID 32012158, Free PMC Article
    2. Meiotic long non-coding meiRNA accumulates as a dot at its genetic locus facilitated by Mmi1 and plays as a decoy to lure Mmi1. Shichino Y, et al. Open Biol, 2014 Jun. PMID 24920274, Free PMC Article
    3. Structural analysis of Red1 as a conserved scaffold of the RNA-targeting MTREC/PAXT complex. Foucher AE, et al. Nat Commun, 2022 Aug 24. PMID 36002457, Free PMC Article
    4. YTH-RNA-binding protein prevents deleterious expression of meiotic proteins by tethering their mRNAs to nuclear foci. Shichino Y, et al. Elife, 2018 Feb 9. PMID 29424342, Free PMC Article
    5. The fission yeast MTREC and EJC orthologs ensure the maturation of meiotic transcripts during meiosis. Marayati BF, et al. RNA, 2016 Sep. PMID 27365210, Free PMC Article

    See all (33) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein-macromolecule adaptor activity EXP
    Inferred from Experiment
    more info
    		 PubMed 
    enables protein-macromolecule adaptor activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear mRNA surveillance of spliceosomal pre-mRNA splicing EXP
    Inferred from Experiment
    more info
    		 PubMed 
    involved_in nuclear mRNA surveillance of spliceosomal pre-mRNA splicing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts EXP
    Inferred from Experiment
    more info
    		 PubMed 
    involved_in nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulatory ncRNA-mediated gene silencing EXP
    Inferred from Experiment
    more info
    		 PubMed 
    involved_in siRNA-independent facultative heterochromatin formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in sno(s)RNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of MTREC complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of Mei2 nuclear dot complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in chromatin IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in cleavage body IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in heterochromatin island IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in nuclear body IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in nuclear exosome focus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in nucleolar peripheral inclusion body IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in nucleus HDA PubMed 
    is_active_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein Red1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      5070931..5073898 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001020279.3 → NP_594850.2  protein Red1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_594850.2

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q9UTR8, Q9UTX3
      Conserved Domains (2) summary
      PRK08581
      Location:16 → 198
      PRK08581; amidase domain-containing protein
      pfam10650
      Location:618 → 639
      zf-C3H1; Putative zinc-finger domain
    Nucleotide Protein
    Heading Accession and Version

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