U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    SAA3P serum amyloid A3, pseudogene [ Homo sapiens (human) ]

    Gene ID: 6290, updated on 10-Dec-2024

    Summary

    Official Symbol
    SAA3Pprovided by HGNC
    Official Full Name
    serum amyloid A3, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:10515
    See related
    Ensembl:ENSG00000290741 AllianceGenome:HGNC:10515
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    SAA3
    Summary
    Predicted to enable Toll-like receptor 4 binding activity and chemoattractant activity. Predicted to be involved in response to stilbenoid. Predicted to act upstream of or within several processes, including I-kappaB phosphorylation; cell chemotaxis; and cellular response to interleukin-1. Predicted to be located in extracellular space. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See SAA3P in Genome Data Viewer
    Location:
    11p15.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (18112472..18116132, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (18208017..18211675, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (18134019..18137679, complement)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene serum amyloid A like 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4490 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4491 Neighboring gene HIG1 hypoxia inducible domain family member 1A pseudogene 5 Neighboring gene MAS related GPR family member X3 Neighboring gene MAS related GPR family member X12, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026576.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC090099
      Related
      ENST00000534768.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      18112472..18116132 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      18208017..18211675 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    External link. Please review our privacy policy.