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    nirD assimilatory nitrite reductase small subunit [ Pseudomonas aeruginosa PAO1 ]

    Gene ID: 878289, updated on 24-Aug-2024

    Summary

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    Gene symbol
    nirD
    Gene description
    assimilatory nitrite reductase small subunit
    Locus tag
    PA1780
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pseudomonas aeruginosa PAO1 (strain: PAO1)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
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    Genomic context

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    Sequence:
    NC_002516.2 (1925797..1926123, complement)

    NC_002516.2Genomic Context describing neighboring genes Neighboring gene uroporphyrin-III C-methyltransferase Neighboring gene assimilatory nitrate reductase Neighboring gene assimilatory nitrite reductase large subunit Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_002516.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene cluster for dissimilatory nitrite reductase (nir) from Pseudomonas aeruginosa: sequencing and identification of a locus for heme d1 biosynthesis. Kawasaki S, et al. J Bacteriol, 1997 Jan. PMID 8982003, Free PMC Article
    2. Transcriptional regulation of nitrate assimilation in Pseudomonas aeruginosa occurs via transcriptional antitermination within the nirBD-PA1779-cobA operon. Romeo A, et al. Microbiology (Reading), 2012 Jun. PMID 22493305
    3. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article
    4. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. Cirz RT, et al. J Bacteriol, 2006 Oct. PMID 17015649, Free PMC Article
    5. Cystic fibrosis sputum supports growth and cues key aspects of Pseudomonas aeruginosa physiology. Palmer KL, et al. J Bacteriol, 2005 Aug. PMID 16030221, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Transcriptional regulation of nitrate assimilation occurs via transcriptional antitermination within the nirBD-PA1779-cobA operon.
      Title: Transcriptional regulation of nitrate assimilation in Pseudomonas aeruginosa occurs via transcriptional antitermination within the nirBD-PA1779-cobA operon.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by PseudoCAP

    Process Evidence Code Pubs
    acts_upstream_of_or_within heme biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    assimilatory nitrite reductase small subunit
    NP_250471.1
    • Product name confidence: class 2 (High similarity to functionally studied protein)

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002516.2 Reference assembly

      Range
      1925797..1926123 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_250471.1 assimilatory nitrite reductase small subunit [Pseudomonas aeruginosa PAO1]

      See identical proteins and their annotated locations for NP_250471.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A367LXK8
      Conserved Domains (1) summary
      cd03530
      Location:3 → 100
      Rieske_NirD_small_Bacillus; Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain ...
    Nucleotide Protein
    Heading Accession and Version

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