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    C330018D20Rik RIKEN cDNA C330018D20 gene [ Mus musculus (house mouse) ]

    Gene ID: 77422, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C330018D20Rikprovided by MGI
    Official Full Name
    RIKEN cDNA C330018D20 geneprovided by MGI
    Primary source
    MGI:MGI:1924672
    See related
    Ensembl:ENSMUSG00000024592 AllianceGenome:MGI:1924672
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Located in mitochondrion. Orthologous to human C5orf63 (chromosome 5 open reading frame 63). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in bladder adult (RPKM 3.6), liver E14 (RPKM 3.4) and 24 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See C330018D20Rik in Genome Data Viewer
    Location:
    18 D3; 18 31.22 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (57088900..57108460, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (56955828..56975379, complement)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene membrane associated ring-CH-type finger 3 Neighboring gene STARR-positive B cell enhancer ABC_E1959 Neighboring gene ribosomal protein S3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_44682 Neighboring gene predicted gene, 34632 Neighboring gene predicted gene 10536 Neighboring gene mitochondrial ribosomal protein L35 pseudogene Neighboring gene polymerase (RNA) II (DNA directed) polypeptide K pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
    2. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
    3. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
    4. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article
    5. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    glutaredoxin-like protein C5orf63 homolog
    Names
    glutaredoxin-like protein YDR286C homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029909.1 → NP_084185.1  glutaredoxin-like protein C5orf63 homolog

      Status: VALIDATED

      Source sequence(s)
      AC109152, AK140255, CD561591
      Consensus CDS
      CCDS50293.1
      UniProtKB/Swiss-Prot
      Q9CWB7
      Related
      ENSMUSP00000025488.9, ENSMUST00000025488.15
      Conserved Domains (1) summary
      pfam05768
      Location:32 → 104
      DUF836; Glutaredoxin-like domain (DUF836)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      57088900..57108460 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006526351.5 → XP_006526414.1  glutaredoxin-like protein C5orf63 homolog isoform X1

      UniProtKB/Swiss-Prot
      Q9CWB7
      Related
      ENSMUSP00000116181.3, ENSMUST00000139243.9
      Conserved Domains (1) summary
      pfam05768
      Location:32 → 104
      DUF836; Glutaredoxin-like domain (DUF836)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9CWB7.1 GenPept UniProtKB/Swiss-Prot:Q9CWB7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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