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    ZC3HAV1L ZC3HAV1 like [ Homo sapiens (human) ]

    Gene ID: 92092, updated on 10-Dec-2024

    Summary

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    Official Symbol
    ZC3HAV1Lprovided by HGNC
    Official Full Name
    ZC3HAV1 likeprovided by HGNC
    Primary source
    HGNC:HGNC:22423
    See related
    Ensembl:ENSG00000146858 AllianceGenome:HGNC:22423
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C7orf39
    Summary
    Located in cytosol. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in placenta (RPKM 3.2), skin (RPKM 3.2) and 24 other tissues See more
    Orthologs
    mouse all
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    Genomic context

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    See ZC3HAV1L in Genome Data Viewer
    Location:
    7q34
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (139021498..139036042, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (140334406..140348950, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (138710452..138720788, complement)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene ATPase H+ transporting V0 subunit a4 Neighboring gene Sharpr-MPRA regulatory region 1249 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:138506625-138507179 Neighboring gene transmembrane protein 213 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:138515129-138515628 Neighboring gene Sharpr-MPRA regulatory region 5807 Neighboring gene KIAA1549 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26744 Neighboring gene RNA, U6 small nuclear 1272, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:138601214-138601736 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:138601737-138602257 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:138609273-138609791 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:138627684-138628464 Neighboring gene NANOG hESC enhancer GRCh37_chr7:138629820-138630361 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:138658812-138659312 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:138659313-138659813 Neighboring gene Sharpr-MPRA regulatory region 8027 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:138665054-138665940 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18689 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18690 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26745 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:138720195-138721114 Neighboring gene uncharacterized LOC107986852 Neighboring gene microRNA 10399 Neighboring gene zinc finger CCCH-type containing, antiviral 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Detection of a common chimeric transcript between human chromosomes 7 and 16. Fang W, et al. Biol Direct, 2012 Dec 29. PMID 23273016, Free PMC Article
    2. Proliferating cell nuclear antigen (PCNA)-associated KIAA0101/PAF15 protein is a cell cycle-regulated anaphase-promoting complex/cyclosome substrate. Emanuele MJ, et al. Proc Natl Acad Sci U S A, 2011 Jun 14. PMID 21628590, Free PMC Article
    3. FIH Regulates Cellular Metabolism through Hydroxylation of the Deubiquitinase OTUB1. Scholz CC, et al. PLoS Biol, 2016 Jan. PMID 26752685, Free PMC Article
    4. Regulation of epidermal differentiation through KDF1-mediated deubiquitination of IKKα. Li Y, et al. EMBO Rep, 2020 May 6. PMID 32239614, Free PMC Article
    5. The protein network surrounding the human telomere repeat binding factors TRF1, TRF2, and POT1. Giannone RJ, et al. PLoS One, 2010 Aug 25. PMID 20811636, Free PMC Article

    See all (36) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC14289

    Gene Ontology Provided by GOA

    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger CCCH-type antiviral protein 1-like
    Names
    zinc finger CCCH-type containing, antiviral 1 like
    zinc finger CCCH-type, antiviral 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_080660.4 → NP_542391.2  zinc finger CCCH-type antiviral protein 1-like

      See identical proteins and their annotated locations for NP_542391.2

      Status: VALIDATED

      Source sequence(s)
      AC083868, BC008842
      Consensus CDS
      CCDS5850.1
      UniProtKB/Swiss-Prot
      Q8WUD9, Q96H79
      Related
      ENSP00000275766.1, ENST00000275766.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      139021498..139036042 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011516688.4 → XP_011514990.1  zinc finger CCCH-type antiviral protein 1-like isoform X1

    2. XM_006716176.4 → XP_006716239.1  zinc finger CCCH-type antiviral protein 1-like isoform X2

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      140334406..140348950 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054359324.1 → XP_054215299.1  zinc finger CCCH-type antiviral protein 1-like isoform X1

    2. XM_054359325.1 → XP_054215300.1  zinc finger CCCH-type antiviral protein 1-like isoform X2

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q96H79.2 GenPept UniProtKB/Swiss-Prot:Q96H79

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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