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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_016977.2 RefSeqGene
- Range
-
5000..25811
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001173408.2 → NP_001166879.1 obscurin-like protein 1 isoform 3 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks multiple 3' exons but has an alternate 3' exon, as compared to variant 1. The resulting isoform (3, also known as isoform B) is much shorter and has a different C-terminus, as compared to isoform 1.
- Source sequence(s)
-
AF035292, CK904385, DB475523, EF063638
- Consensus CDS
-
CCDS54433.1
- UniProtKB/Swiss-Prot
-
O75147
- Related
- ENSP00000362980.4, ENST00000373873.8
- Conserved Domains (5) summary
-
- smart00408
Location:914 → 971
- IGc2; Immunoglobulin C-2 Type
- smart00409
Location:134 → 226
- IG; Immunoglobulin
- smart00410
Location:18 → 101
- IG_like; Immunoglobulin like
- cd00063
Location:518 → 602
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cd00096
Location:30 → 33
- Ig; Ig strand B [structural motif]
-
NM_001173431.2 → NP_001166902.1 obscurin-like protein 1 isoform 2 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks multiple 3' exons but has an alternate 3' sequence, as compared to variant 1. The resulting isoform (2, also known as isoform C) is shorter and has a different C-terminus, as compared to isoform 1.
- Source sequence(s)
-
AC009955, AK023854, CK904385, DB475523, EF063637
- Consensus CDS
-
CCDS63134.1
- UniProtKB/TrEMBL
-
A6NN50
- Related
- ENSP00000474519.1, ENST00000603926.5
- Conserved Domains (4) summary
-
- smart00408
Location:1099 → 1159
- IGc2; Immunoglobulin C-2 Type
- smart00409
Location:134 → 226
- IG; Immunoglobulin
- smart00410
Location:725 → 802
- IG_like; Immunoglobulin like
- cd00063
Location:518 → 602
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
-
NM_015311.3 → NP_056126.1 obscurin-like protein 1 isoform 1 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) is the longest transcript and encodes the longest isoform (1, also known as isoform A).
- Source sequence(s)
-
CK904385, DB475523, EF063638, F30329
- Consensus CDS
-
CCDS46520.1
- UniProtKB/Swiss-Prot
- A0A024R468, A4KVA4, A4KVA5, O75147, Q96IW3, S4R3M6
- UniProtKB/TrEMBL
-
A6NN50
- Related
- ENSP00000385636.1, ENST00000404537.6
- Conserved Domains (9) summary
-
- cd00096
Location:916 → 984
- Ig; Immunoglobulin domain
- cd04979
Location:1178 → 1267
- Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain of semaphorin
- smart00408
Location:142 → 216
- IGc2; Immunoglobulin C-2 Type
- smart00409
Location:134 → 226
- IG; Immunoglobulin
- smart00410
Location:1815 → 1893
- IG_like; Immunoglobulin like
- cd00063
Location:518 → 602
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam07679
Location:1361 → 1444
- I-set; Immunoglobulin I-set domain
- pfam00047
Location:1364 → 1430
- ig; Immunoglobulin domain
- cl11960
Location:252 → 336
- Ig; Immunoglobulin domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000002.12 Reference GRCh38.p14 Primary Assembly
- Range
-
219547206..219571539 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017003700.2 → XP_016859189.1 obscurin-like protein 1 isoform X6
- UniProtKB/TrEMBL
-
A6NN50
-
XM_017003699.2 → XP_016859188.1 obscurin-like protein 1 isoform X4
- UniProtKB/TrEMBL
-
A6NN50
-
XM_017003698.2 → XP_016859187.1 obscurin-like protein 1 isoform X5
- UniProtKB/TrEMBL
-
A6NN50
-
XM_011510857.3 → XP_011509159.1 obscurin-like protein 1 isoform X1
- UniProtKB/TrEMBL
-
A6NN50
- Conserved Domains (9) summary
-
- cd00096
Location:916 → 984
- Ig; Immunoglobulin domain
- cd04979
Location:1178 → 1267
- Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain of semaphorin
- smart00408
Location:142 → 216
- IGc2; Immunoglobulin C-2 Type
- smart00409
Location:134 → 226
- IG; Immunoglobulin
- smart00410
Location:1815 → 1893
- IG_like; Immunoglobulin like
- cd00063
Location:518 → 602
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam07679
Location:1361 → 1444
- I-set; Immunoglobulin I-set domain
- pfam00047
Location:1364 → 1430
- ig; Immunoglobulin domain
- cl11960
Location:252 → 336
- Ig; Immunoglobulin domain
-
XM_017003697.3 → XP_016859186.1 obscurin-like protein 1 isoform X2
- UniProtKB/TrEMBL
-
A6NN50
-
XM_017003696.3 → XP_016859185.1 obscurin-like protein 1 isoform X3
- UniProtKB/TrEMBL
-
A6NN50
-
XM_011510863.4 → XP_011509165.1 obscurin-like protein 1 isoform X7
- UniProtKB/TrEMBL
-
A6NN50
- Conserved Domains (9) summary
-
- cd00096
Location:916 → 984
- Ig; Immunoglobulin domain
- cd04979
Location:1178 → 1267
- Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain of semaphorin
- smart00408
Location:142 → 216
- IGc2; Immunoglobulin C-2 Type
- smart00409
Location:1456 → 1535
- IG; Immunoglobulin
- smart00410
Location:134 → 226
- IG_like; Immunoglobulin like
- cd00063
Location:518 → 602
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam07679
Location:1361 → 1444
- I-set; Immunoglobulin I-set domain
- pfam00047
Location:1364 → 1430
- ig; Immunoglobulin domain
- cl11960
Location:252 → 336
- Ig; Immunoglobulin domain
-
XM_011510865.3 → XP_011509167.1 obscurin-like protein 1 isoform X8
- Conserved Domains (8) summary
-
- cd00096
Location:263 → 333
- Ig; Immunoglobulin domain
- cd04979
Location:1178 → 1267
- Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain of semaphorin
- smart00408
Location:142 → 216
- IGc2; Immunoglobulin C-2 Type
- smart00409
Location:1005 → 1074
- IG; Immunoglobulin
- smart00410
Location:134 → 226
- IG_like; Immunoglobulin like
- cd00063
Location:518 → 602
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam07679
Location:342 → 426
- I-set; Immunoglobulin I-set domain
- cl11960
Location:1364 → 1404
- Ig; Immunoglobulin domain
-
XM_047443800.1 → XP_047299756.1 obscurin-like protein 1 isoform X11
-
XM_011510866.3 → XP_011509168.1 obscurin-like protein 1 isoform X10
- Conserved Domains (8) summary
-
- cd00096
Location:263 → 333
- Ig; Immunoglobulin domain
- cd04979
Location:1086 → 1175
- Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain of semaphorin
- smart00408
Location:142 → 216
- IGc2; Immunoglobulin C-2 Type
- smart00409
Location:1190 → 1251
- IG; Immunoglobulin
- smart00410
Location:134 → 226
- IG_like; Immunoglobulin like
- cd00063
Location:518 → 602
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam07679
Location:342 → 426
- I-set; Immunoglobulin I-set domain
- cl11960
Location:1272 → 1312
- Ig; Immunoglobulin domain
-
XM_047443799.1 → XP_047299755.1 obscurin-like protein 1 isoform X9
-
XM_011510864.3 → XP_011509166.1 obscurin-like protein 1 isoform X8
- Conserved Domains (8) summary
-
- cd00096
Location:263 → 333
- Ig; Immunoglobulin domain
- cd04979
Location:1178 → 1267
- Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain of semaphorin
- smart00408
Location:142 → 216
- IGc2; Immunoglobulin C-2 Type
- smart00409
Location:1005 → 1074
- IG; Immunoglobulin
- smart00410
Location:134 → 226
- IG_like; Immunoglobulin like
- cd00063
Location:518 → 602
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam07679
Location:342 → 426
- I-set; Immunoglobulin I-set domain
- cl11960
Location:1364 → 1404
- Ig; Immunoglobulin domain
Alternate T2T-CHM13v2.0
Genomic
-
NC_060926.1 Alternate T2T-CHM13v2.0
- Range
-
220034047..220056240 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054341155.1 → XP_054197130.1 obscurin-like protein 1 isoform X6
- UniProtKB/TrEMBL
-
A6NN50
-
XM_054341153.1 → XP_054197128.1 obscurin-like protein 1 isoform X4
- UniProtKB/TrEMBL
-
A6NN50
-
XM_054341154.1 → XP_054197129.1 obscurin-like protein 1 isoform X5
- UniProtKB/TrEMBL
-
A6NN50
-
XM_054341150.1 → XP_054197125.1 obscurin-like protein 1 isoform X1
- UniProtKB/TrEMBL
-
A6NN50
-
XM_054341151.1 → XP_054197126.1 obscurin-like protein 1 isoform X2
- UniProtKB/TrEMBL
-
A6NN50
-
XM_054341152.1 → XP_054197127.1 obscurin-like protein 1 isoform X3
- UniProtKB/TrEMBL
-
A6NN50
-
XM_054341156.1 → XP_054197131.1 obscurin-like protein 1 isoform X7
- UniProtKB/TrEMBL
-
A6NN50
-
XM_054341158.1 → XP_054197133.1 obscurin-like protein 1 isoform X8
-
XM_054341161.1 → XP_054197136.1 obscurin-like protein 1 isoform X11
-
XM_054341160.1 → XP_054197135.1 obscurin-like protein 1 isoform X10
-
XM_054341159.1 → XP_054197134.1 obscurin-like protein 1 isoform X9
-
XM_054341157.1 → XP_054197132.1 obscurin-like protein 1 isoform X8