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    CSS2 Css2p [ Saccharomyces cerevisiae S288C ]

    Gene ID: 850576, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CSS2
    Official Full Name
    Css2p
    Primary source
    SGD:S000001916
    Locus tag
    YFR020W
    See related
    AllianceGenome:SGD:S000001916; FungiDB:YFR020W; VEuPathDB:YFR020W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Located in endoplasmic reticulum and extracellular region. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See CSS2 in Genome Data Viewer
    Location:
    chromosome: VI
    Exon count:
    1
    Sequence:
    Chromosome: VI; NC_001138.5 (192737..193435)

    Chromosome VI - NC_001138.5Genomic Context describing neighboring genes Neighboring gene 1-phosphatidylinositol-3-phosphate 5-kinase Neighboring gene tRNA-Ser Neighboring gene phosphoinositide binding protein ATG18 Neighboring gene Rog3p

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001138.5

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. High-resolution view of the yeast meiotic program revealed by ribosome profiling. Brar GA, et al. Science, 2012 Feb 3. PMID 22194413, Free PMC Article
    2. Analysis of the nucleotide sequence of chromosome VI from Saccharomyces cerevisiae. Murakami Y, et al. Nat Genet, 1995 Jul. PMID 7670463
    3. Functional profiling of the Saccharomyces cerevisiae genome. Giaever G, et al. Nature, 2002 Jul 25. PMID 12140549
    4. One library to make them all: streamlining the creation of yeast libraries via a SWAp-Tag strategy. Yofe I, et al. Nat Methods, 2016 Apr. PMID 26928762, Free PMC Article
    5. A systematic proximity ligation approach to studying protein-substrate specificity identifies the substrate spectrum of the Ssh1 translocon. Cohen N, et al. EMBO J, 2023 Jun 1. PMID 37073826, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in endoplasmic reticulum HDA PubMed 
    located_in extracellular region HDA PubMed 
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Css2p
    NP_001257674.1
    • hypothetical protein, secreted when constitutively expressed; SWAT-GFP fusion protein localizes to the endoplasmic reticulum (ER) and extracellular region, while mCherry fusion protein localizes to the ER and vacuole; mRNA identified as translated by ribosome profiling data; CSS2 is a non-essential gene

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001138.5 Reference assembly

      Range
      192737..193435
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001270745.1 → NP_001257674.1  TPA: Css2p [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_001257674.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      I2HB58, P43600
      UniProtKB/TrEMBL
      C8Z7V5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P43600.1

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    Other Literature Sources
    Molecular Biology Databases
    Research Materials