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    SNR13 [ Saccharomyces cerevisiae S288C ]

    Gene ID: 9164878, updated on 9-Dec-2024

    Summary

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    Official Symbol
    SNR13
    Primary source
    SGD:S000006498
    Locus tag
    YNCD0030W
    See related
    AllianceGenome:SGD:S000006498
    Gene type
    ncRNA
    RNA name
    snoRNA
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Enables rRNA 2'-O-ribose methylation guide activity. Involved in rRNA methylation. Located in cytoplasm. Part of box C/D methylation guide snoRNP complex. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See SNR13 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    1
    Sequence:
    Chromosome: IV; NC_001136.10 (1402919..1403042)

    Chromosome IV - NC_001136.10Genomic Context describing neighboring genes Neighboring gene Ugo1p Neighboring gene ribosomal 60S subunit protein L27B Neighboring gene TRAPP subunit TRS31 Neighboring gene U4/U6-U5 snRNP complex subunit PRP3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001136.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The putative nucleic acid helicase Sen1p is required for formation and stability of termini and for maximal rates of synthesis and levels of accumulation of small nucleolar RNAs in Saccharomyces cerevisiae. Rasmussen TP, et al. Mol Cell Biol, 1998 Dec. PMID 9819377, Free PMC Article
    2. Ssu72 protein mediates both poly(A)-coupled and poly(A)-independent termination of RNA polymerase II transcription. Steinmetz EJ, et al. Mol Cell Biol, 2003 Sep. PMID 12944462, Free PMC Article
    3. Revealing stable processing products from ribosome-associated small RNAs by deep-sequencing data analysis. Zywicki M, et al. Nucleic Acids Res, 2012 May. PMID 22266655, Free PMC Article
    4. Budding yeast telomerase RNA transcription termination is dictated by the Nrd1/Nab3 non-coding RNA termination pathway. Noël JF, et al. Nucleic Acids Res, 2012 Jul. PMID 22379137, Free PMC Article
    5. Identification of cis elements directing termination of yeast nonpolyadenylated snoRNA transcripts. Carroll KL, et al. Mol Cell Biol, 2004 Jul. PMID 15226427, Free PMC Article

    See all (25) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    • C/D box small nucleolar RNA (snoRNA); guides 2'-O-methylation of large subunit (LSU) rRNA at positions A2280 and A2281

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables rRNA 2'-O-ribose methylation guide activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables rRNA 2'-O-ribose methylation guide activity ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA methylation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in rRNA methylation ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of box C/D methylation guide snoRNP complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of box C/D methylation guide snoRNP complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleolus IC
    Inferred by Curator
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001136.10 Reference assembly

      Range
      1402919..1403042
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_132161.1 RNA Sequence

      Status: REVIEWED

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