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    rps-13 Small ribosomal subunit protein uS15 [ Caenorhabditis elegans ]

    Gene ID: 175901, updated on 9-Dec-2024

    Summary

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    Official Symbol
    rps-13
    Official Full Name
    Small ribosomal subunit protein uS15
    Primary source
    WormBase:WBGene00004482
    Locus tag
    CELE_C16A3.9
    See related
    AllianceGenome:WB:WBGene00004482
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable small ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal small subunit biogenesis. Predicted to be located in cytoplasm; nucleus; and ribosome. Predicted to be part of cytosolic small ribosomal subunit and small-subunit processome. Predicted to be active in nucleolus. Orthologous to human RPS13 (ribosomal protein S13). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See rps-13 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    3
    Sequence:
    Chromosome: III; NC_003281.10 (6374097..6374997, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene KH domain-containing protein akap-1;Tudor domain-containing protein Neighboring gene N-acetyltransferase domain-containing protein Neighboring gene THO complex subunit 2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Transcriptional repressor NF-X1 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Http://C. elegans: mining the functional genomic landscape. Kim SK. Nat Rev Genet, 2001 Sep. PMID 11533717
    2. Caenorhabditis elegans cisRED: a catalogue of conserved genomic elements. Sleumer MC, et al. Nucleic Acids Res, 2009 Mar. PMID 19151087, Free PMC Article
    3. NatB domain-containing CRA-1 antagonizes hydrolase ACER-1 linking acetyl-CoA metabolism to the initiation of recombination during C. elegans meiosis. Gao J, et al. PLoS Genet, 2015 Mar. PMID 25768301, Free PMC Article
    4. Identification of cross-linked peptides from complex samples. Yang B, et al. Nat Methods, 2012 Sep. PMID 22772728
    5. The Helicase Aquarius/EMB-4 Is Required to Overcome Intronic Barriers to Allow Nuclear RNAi Pathways to Heritably Silence Transcription. Akay A, et al. Dev Cell, 2017 Aug 7. PMID 28787591, Free PMC Article

    See all (22) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables small ribosomal subunit rRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in ribosomal small subunit biogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of small-subunit processome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    Small ribosomal subunit protein uS15
    NP_498393.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      6374097..6374997 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_065992.8 → NP_498393.1  Small ribosomal subunit protein uS15 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_498393.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P51404
      Conserved Domains (1) summary
      PTZ00072
      Location:4 → 151
      PTZ00072; 40S ribosomal protein S13; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P51404.2

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