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    Y73F8A.26 Uncharacterized protein [ Caenorhabditis elegans ]

    Gene ID: 178435, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y73F8A.26
    Official Full Name
    Uncharacterized protein
    Primary source
    WormBase:WBGene00013531
    Locus tag
    CELE_Y73F8A.26
    See related
    AllianceGenome:WB:WBGene00013531
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to contribute to collagen binding activity. Predicted to be involved in collagen fibril organization. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 7 and osteogenesis imperfecta type 8. Orthologous to several human genes including CRTAP (cartilage associated protein) and P3H4 (prolyl 3-hydroxylase family member 4 (inactive)). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y73F8A.26 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    7
    Sequence:
    Chromosome: IV; NC_003282.8 (15473660..15477512)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene CCR4-NOT transcription complex subunit 11;Secreted protein Neighboring gene ncRNA Neighboring gene 2Fe-2S ferredoxin-type domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
    2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    contributes_to collagen binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in collagen fibril organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Uncharacterized protein
    NP_001294109.1
    • Confirmed by transcript evidence
    NP_502862.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      15473660..15477512
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_070461.5 → NP_502862.1  Uncharacterized protein CELE_Y73F8A.26 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_502862.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9NA33

    2. NM_001307180.3 → NP_001294109.1  Uncharacterized protein CELE_Y73F8A.26 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294109.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A078BPI8
    Nucleotide Protein
    Heading Accession and Version

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