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    srr-4 Serpentine Receptor, class R [ Caenorhabditis elegans ]

    Gene ID: 187292, updated on 9-Dec-2024

    Summary

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    Official Symbol
    srr-4
    Official Full Name
    Serpentine Receptor, class R
    Primary source
    WormBase:WBGene00005655
    Locus tag
    CELE_K11D12.3
    See related
    AllianceGenome:WB:WBGene00005655
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in determination of adult lifespan. Predicted to be located in membrane. Is expressed in several structures, including excretory cell; head neurons; pharynx; phasmid neurons; and vulva. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See srr-4 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    7
    Sequence:
    Chromosome: V; NC_003283.11 (5019224..5022363)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ABC transmembrane type-1 domain-containing protein Neighboring gene ncRNA Neighboring gene Choline/carnitine acyltransferase domain-containing protein Neighboring gene Sugar transporter SWEET

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Longevity Genes Revealed by Integrative Analysis of Isoform-Specific daf-16/FoxO Mutants of Caenorhabditis elegans. Chen AT, et al. Genetics, 2015 Oct. PMID 26219299, Free PMC Article
    2. Amino acid and protein specificity of protein fatty acylation in C. elegans. Zhang B, et al. Proc Natl Acad Sci U S A, 2024 Jan 30. PMID 38252833, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in determination of adult lifespan IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Serpentine Receptor, class R
    NP_001122976.1
    • Product from WormBase gene class srr;
      Partially confirmed by transcript evidence
    NP_504347.2
    • Product from WormBase gene class srr;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      5019224..5022363
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_071946.10 → NP_504347.2  Serpentine Receptor, class R [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_504347.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      O44618
      Conserved Domains (1) summary
      pfam03268
      Location:25 → 384
      DUF267; Caenorhabditis protein of unknown function, DUF267

    2. NM_001129504.4 → NP_001122976.1  Serpentine Receptor, class R [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001122976.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KYR4
      Conserved Domains (1) summary
      pfam03268
      Location:25 → 384
      DUF267; Caenorhabditis protein of unknown function, DUF267
    Nucleotide Protein
    Heading Accession and Version

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