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    byn-1 Cell adhesion protein byn-1 [ Caenorhabditis elegans ]

    Gene ID: 175968, updated on 9-Dec-2024

    Summary

    Official Symbol
    byn-1
    Official Full Name
    Cell adhesion protein byn-1
    Primary source
    WormBase:WBGene00000276
    Locus tag
    CELE_F57B9.5
    See related
    AllianceGenome:WB:WBGene00000276
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable snoRNA binding activity. Predicted to be involved in rRNA processing. Predicted to be part of preribosome, small subunit precursor. Predicted to be active in cytoplasm and nucleolus. Orthologous to human BYSL (bystin like). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See byn-1 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    10
    Sequence:
    Chromosome: III; NC_003281.10 (6932001..6935862)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Eukaryotic initiation factor 4A Neighboring gene Tyrosine-protein kinase Neighboring gene 4-hydroxybenzoate polyprenyltransferase, mitochondrial Neighboring gene RNA helicase Neighboring gene Activated in Blocked Unfolded protein response

    Interactions

    General gene information

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables snoRNA binding  
    Process Evidence Code Pubs
    involved_in rRNA processing  
    Component Evidence Code Pubs
    is_active_in cytoplasm  
    located_in intracellular organelle  
    is_active_in nucleolus  
    part_of preribosome, small subunit precursor  

    General protein information

    Preferred Names
    Cell adhesion protein byn-1
    NP_498510.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      6932001..6935862
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_066109.6 → NP_498510.1  Cell adhesion protein byn-1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_498510.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q20932
      Conserved Domains (1) summary
      pfam05291
      Location:146 → 430
      Bystin
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