ykt-6 uncharacterized protein [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: ykt-6
Official Full Name: uncharacterized protein
Primary source: WormBase:WBGene00015164
Locus tag: CELE_B0361.10
See related: AllianceGenome:WB:WBGene00015164
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable SNAP receptor activity and protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; vesicle docking involved in exocytosis; and vesicle targeting. Predicted to be located in endoplasmic reticulum and plasma membrane. Predicted to be active in Golgi apparatus. Orthologous to human YKT6 (YKT6 v-SNARE homolog). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See ykt-6 in Genome Data Viewer

Location:: chromosome: III

Exon count:: 3

Sequence:: Chromosome: III; NC_003281.10 (7285983..7287603, complement)

Chromosome III - NC_003281.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

B0361.8 (e-PCR)
- UniSTS:313398

B0361.10 (e-PCR)
- UniSTS:317347

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables SNAP receptor activity	IBA Inferred from Biological aspect of Ancestor more info
enables protein-cysteine S-palmitoyltransferase activity	ISS Inferred from Sequence or Structural Similarity more info	PubMed

Process	Evidence Code	Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport	IBA Inferred from Biological aspect of Ancestor more info
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport	ISS Inferred from Sequence or Structural Similarity more info	PubMed
involved_in membrane fusion	IEA Inferred from Electronic Annotation more info
involved_in vesicle docking involved in exocytosis	ISS Inferred from Sequence or Structural Similarity more info	PubMed
involved_in vesicle targeting	ISS Inferred from Sequence or Structural Similarity more info	PubMed
involved_in vesicle-mediated transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in Golgi apparatus	IBA Inferred from Biological aspect of Ancestor more info
located_in Golgi membrane	IEA Inferred from Electronic Annotation more info
located_in cytoplasmic vesicle membrane	IEA Inferred from Electronic Annotation more info
located_in endoplasmic reticulum	ISS Inferred from Sequence or Structural Similarity more info	PubMed
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in plasma membrane	IEA Inferred from Electronic Annotation more info
located_in plasma membrane	ISS Inferred from Sequence or Structural Similarity more info	PubMed

General protein information

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Preferred Names: uncharacterized protein

NP_001379572.1

Product from WormBase gene class ykt;
Confirmed by transcript evidence; YKT6 (yeast v-SNARE) homolog

NCBI Reference Sequences (RefSeq)

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Genome Annotation

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Reference assembly

Genomic

NC_003281.10 Reference assembly

Range

7285983..7287603 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001392142.1 → NP_001379572.1 uncharacterized protein CELE_B0361.10 [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

Q9TXZ9

Conserved Domains (1) summary

COG5143
Location:3 → 198

SNC1; Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]