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    lron-3 LRRCT domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 181643, updated on 9-Dec-2024

    Summary

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    Official Symbol
    lron-3
    Official Full Name
    LRRCT domain-containing protein
    Primary source
    WormBase:WBGene00007261
    Locus tag
    CELE_C02C6.3
    See related
    AllianceGenome:WB:WBGene00007261
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be active in membrane. Orthologous to several human genes including TPBG (trophoblast glycoprotein). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See lron-3 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    10
    Sequence:
    Chromosome: X; NC_003284.9 (15546644..15557949, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene G_PROTEIN_RECEP_F1_2 domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Amino acid and protein specificity of protein fatty acylation in C. elegans. Zhang B, et al. Proc Natl Acad Sci U S A, 2024 Jan 30. PMID 38252833, Free PMC Article
    2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    LRRCT domain-containing protein
    NP_001123092.1
    • Confirmed by transcript evidence
    NP_001123093.1
    • Confirmed by transcript evidence
    NP_001359588.1
    • Confirmed by transcript evidence
    NP_001359701.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      15546644..15557949 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001373598.2 → NP_001359588.1  LRRCT domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q93177
      Conserved Domains (3) summary
      COG4886
      Location:109 → 258
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:118 → 141
      LRR_RI; leucine-rich repeat [structural motif]
      cl15307
      Location:282 → 335
      TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

    2. NM_001373599.5 → NP_001359701.1  LRRCT domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q2XMZ4
      Conserved Domains (3) summary
      COG4886
      Location:1 → 120
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:4 → 29
      LRR_RI; leucine-rich repeat [structural motif]
      cl15307
      Location:144 → 197
      TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

    3. NM_001129620.4 → NP_001123092.1  LRRCT domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001123092.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A6ZJ74

    4. NM_001129621.4 → NP_001123093.1  LRRCT domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001123093.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A6ZJ75
    Nucleotide Protein
    Heading Accession and Version

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