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    rsp-6 putative splicing factor, arginine/serine-rich 6 [ Caenorhabditis elegans ]

    Gene ID: 177566, updated on 9-Dec-2024

    Summary

    Official Symbol
    rsp-6
    Official Full Name
    putative splicing factor, arginine/serine-rich 6
    Primary source
    WormBase:WBGene00004703
    Locus tag
    CELE_C33H5.12
    See related
    AllianceGenome:WB:WBGene00004703
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable mRNA binding activity. Involved in gonad development and regulation of termination of DNA-templated transcription. Located in nucleus. Is expressed in several structures, including intestine. Orthologous to several human genes including SRSF7 (serine and arginine rich splicing factor 7). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See rsp-6 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    6
    Sequence:
    Chromosome: IV; NC_003282.8 (7789847..7791229, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene IntraMembrane Protease (IMPAS) family Neighboring gene CYSTM domain-containing protein Neighboring gene Nucleoside-triphosphatase ntp-1

    Pathways from PubChem

    Interactions

    General gene information

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables RNA binding  
    enables RNA binding PubMed 
    enables RNA binding PubMed 
    enables mRNA binding  
    enables nucleic acid binding  
    Process Evidence Code Pubs
    involved_in RNA splicing  
    involved_in RNA splicing PubMed 
    involved_in cell differentiation  
    involved_in gonad development PubMed 
    involved_in mRNA cis splicing, via spliceosome  
    involved_in mRNA processing  
    involved_in mRNA splicing, via spliceosome PubMed 
    involved_in regulation of termination of DNA-templated transcription PubMed 
    involved_in sex differentiation  
    Component Evidence Code Pubs
    is_active_in nuclear speck  
    located_in nucleus PubMed 
    located_in nucleus  

    General protein information

    Preferred Names
    putative splicing factor, arginine/serine-rich 6
    NP_741446.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      7789847..7791229 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_171383.6 → NP_741446.1  putative splicing factor, arginine/serine-rich 6 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_741446.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q18409, Q8WSW0, Q8WSW1
      Conserved Domains (2) summary
      COG0724
      Location:2 → 75
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12373
      Location:4 → 75
      RRM_SRSF3_like; RNA recognition motif in serine/arginine-rich splicing factor 3 (SRSF3) and similar proteins

    RNA

    1. NR_131573.1 RNA Sequence

      Status: REVIEWED

    2. NR_131574.1 RNA Sequence

      Status: REVIEWED

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