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    zgc:55943 zgc:55943 [ Danio rerio (zebrafish) ]

    Gene ID: 406337, updated on 4-Jan-2025

    Summary

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    Official Symbol
    zgc:55943provided by ZNC
    Official Full Name
    zgc:55943provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2013
    See related
    Ensembl:ENSDARG00000029292 AllianceGenome:ZFIN:ZDB-GENE-040426-2013
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:86868; wu:fd60c05
    Summary
    Orthologous to human C1orf21 (chromosome 1 open reading frame 21). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    all
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    Genomic context

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    See zgc:55943 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (9957914..9971728, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (10160094..10173908, complement)

    Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene acyl-CoA binding domain containing 5b Neighboring gene TSEN15 tRNA splicing endonuclease subunit Neighboring gene SEC22 homolog B, vesicle trafficking protein a Neighboring gene IMP U3 small nucleolar ribonucleoprotein 3 Neighboring gene solute carrier family 35 member A3b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC86868

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC406337

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001291356.1 → NP_001278285.1  uncharacterized protein LOC406337 isoform 1

      See identical proteins and their annotated locations for NP_001278285.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer protein (isoform 1).
      Source sequence(s)
      CR956623, EH435020
      UniProtKB/TrEMBL
      A0A8M1P0M6, Q6AZ99
      Related
      ENSDARP00000122697.1, ENSDART00000131613.3
      Conserved Domains (1) summary
      pfam15389
      Location:2 → 110
      DUF4612; Domain of unknown function (DUF4612)

    2. NM_213064.2 → NP_998229.1  uncharacterized protein LOC406337 isoform 2

      See identical proteins and their annotated locations for NP_998229.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site in the 5' coding region compared to variant 1. The resulting protein (isoform 2) is shorter but has the same N- and C-termini compared to isoform 1.
      Source sequence(s)
      CR956623
      UniProtKB/TrEMBL
      A0A8M1PG97, Q803B6
      Related
      ENSDARP00000048654.6, ENSDART00000048655.8
      Conserved Domains (1) summary
      pfam15389
      Location:2 → 99
      DUF4612; Domain of unknown function (DUF4612)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007113.7 Reference GRCz11 Primary Assembly

      Range
      9957914..9971728 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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