harbi2 harbinger transposase derived 2 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: harbi2provided by ZNC
Official Full Name: harbinger transposase derived 2provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-3975
See related: Ensembl:ENSDARG00000028815 AllianceGenome:ZFIN:ZDB-GENE-030131-3975
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fc62b10; wu:fc62b10; zgc:162945
Summary: Predicted to enable metal ion binding activity and nuclease activity. Predicted to be located in cytoplasm and nucleus. Is expressed in spinal cord. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs: all
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Genomic context

Location:: chromosome: 7

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (30270410..30272873, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (29999260..30001723, complement)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables hydrolase activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables nuclease activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: uncharacterized protein LOC560936

Names: putative nuclease HARBI1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001128809.2 → NP_001122281.1 uncharacterized protein LOC560936

Status: VALIDATED

Source sequence(s)

EH436536, EH570988

UniProtKB/TrEMBL

A0A8M1NKV3, B0V362

Related

ENSDARP00000090360.3, ENSDART00000099586.4

Conserved Domains (1) summary

pfam13359
Location:153 → 301

DDE_Tnp_4; DDE superfamily endonuclease