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    BaraB Baramicin B [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 35894, updated on 9-Dec-2024

    Summary

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    Official Symbol
    BaraBprovided by FlyBase
    Official Full Name
    Baramicin Bprovided by FlyBase
    Primary source
    FLYBASE:FBgn0033353
    Locus tag
    Dmel_CG13749
    See related
    AllianceGenome:FB:FBgn0033353
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG13749; Dmel\CG13749
    Summary
    Involved in nervous system process. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See BaraB in Genome Data Viewer
    Location:
    44F9-44F9; 2-59 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (8933423..8934445)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (4820928..4821950)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene aaRS-interacting multifunctional protein 1 Neighboring gene Poly(A)-binding protein-dependent poly(A) ribonuclease 2 Neighboring gene Fanconi anemia complementation group I Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Repeated truncation of a modular antimicrobial peptide gene for neural context. Hanson MA, et al. PLoS Genet, 2022 Jun. PMID 35714143, Free PMC Article
    2. Reproductive status alters transcriptomic response to infection in female Drosophila melanogaster. Short SM, et al. G3 (Bethesda), 2013 May 20. PMID 23550122, Free PMC Article
    3. Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome. MacMillan HA, et al. Sci Rep, 2016 Jun 30. PMID 27357258, Free PMC Article
    4. Transcriptomic analysis of inbreeding depression in cold-sensitive Drosophila melanogaster shows upregulation of the immune response. Vermeulen CJ, et al. J Evol Biol, 2013 Sep. PMID 23944235
    5. Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes. López-Varea A, et al. G3 (Bethesda), 2021 Dec 8. PMID 34599810, Free PMC Article

    See all (23) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in nervous system process IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    NOT located_in extracellular space IKR
    Inferred from Key Residues
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    baramicin B
    Names
    BaraB-PB
    BaraB-PC
    CG13749-PB
    CG13749-PC
    NP_001400997.1
    • deletion
    NP_610428.3
    • deletion

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      8933423..8934445
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_136584.2 → NP_610428.3  baramicin B, isoform B [Drosophila melanogaster]

      Status: REVIEWED

    2. NM_001414061.1 → NP_001400997.1  baramicin B, isoform C [Drosophila melanogaster]

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A1Z7L0 A1Z7L0

    Gene LinkOut

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