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    H2-Pa histocompatibility 2, P region alpha locus [ Mus musculus (house mouse) ]

    Gene ID: 15003, updated on 17-Aug-2024

    Summary

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    Official Symbol
    H2-Paprovided by MGI
    Official Full Name
    histocompatibility 2, P region alpha locusprovided by MGI
    Primary source
    MGI:MGI:105314
    See related
    Ensembl:ENSMUSG00000098241 AllianceGenome:MGI:105314
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    H2-Pa-ps
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    Genomic context

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    See H2-Pa in Genome Data Viewer
    Location:
    17 B1; 17 17.98 cM
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (34303587..34304826)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (34084613..34085852)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene collagen, type XI, alpha 2 Neighboring gene STARR-positive B cell enhancer ABC_E11636 Neighboring gene STARR-positive B cell enhancer ABC_E5596 Neighboring gene histocompatibility 2, P region beta locus Neighboring gene cDNA sequence BC051537 Neighboring gene STARR-positive B cell enhancer ABC_E11637 Neighboring gene histocompatibility 2, O region alpha locus Neighboring gene STARR-positive B cell enhancer ABC_E7522 Neighboring gene STARR-seq mESC enhancer starr_42423 Neighboring gene bromodomain containing 2 Neighboring gene histocompatibility 2, class II, locus DMa

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mouse HLA-DPA homologue H2-Pa: a pseudogene that maps between H2-Pb and H2-Oa. Arimura Y, et al. Immunogenetics, 1996. PMID 8550099
    2. Structure of novel rat major histocompatibility complex class II genes RT1.Ha and Hb. Arimura Y, et al. Immunogenetics, 1995. PMID 7721355
    3. The mouse as a model for the effects of MHC genes on human disease. Allcock RJ, et al. Immunol Today, 2000 Jul. PMID 10871872

    GeneRIFs: Gene References Into Functions

    General gene information

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    Other Names

    • H2-Pa pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_001379.2 

      Range
      101..1340
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      34303587..34304826
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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