Trim29 tripartite motif-containing 29 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Trim29provided by RGD
Official Full Name: tripartite motif-containing 29provided by RGD
Primary source: RGD:1307858
See related: EnsemblRapid:ENSRNOG00000021771 AllianceGenome:RGD:1307858
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to enable identical protein binding activity and p53 binding activity. Predicted to act upstream of or within negative regulation of protein localization to nucleus and negative regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. Orthologous to human TRIM29 (tripartite motif containing 29). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in Thymus (RPKM 29.6), Lung (RPKM 25.2) and 2 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 8q22

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	8	NC_086026.1 (52579175..52603919)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	8	NC_051343.1 (43682221..43706992)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	8	NC_005107.4 (47674321..47699065)

Chromosome 8 - NC_086026.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

BI279694 (e-PCR)
- UniSTS:245017

BI280076 (e-PCR)
- UniSTS:249019

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables identical protein binding	ISO Inferred from Sequence Orthology more info
enables p53 binding	ISO Inferred from Sequence Orthology more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within negative regulation of protein localization to nucleus	ISO Inferred from Sequence Orthology more info
acts_upstream_of_or_within negative regulation of transcription by RNA polymerase II	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
located_in cytoplasm	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: tripartite motif-containing protein 29

Names: tripartite motif protein 29

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001106815.1 → NP_001100285.1 tripartite motif-containing protein 29

See identical proteins and their annotated locations for NP_001100285.1

Status: PROVISIONAL

Source sequence(s)

CH473975

UniProtKB/TrEMBL

A6J3U3, D4ABW9

Related

ENSRNOP00000073687.2, ENSRNOT00000078776.3

Conserved Domains (3) summary

cd19769
Location:223 → 260

Bbox2_TRIM16-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM16, TRIM29, TRIM47 and similar proteins

cd19840
Location:171 → 217

Bbox1_TRIM29; B-box-type 1 zinc finger found in tripartite motif-containing protein 29 (TRIM29) and similar proteins

pfam03938
Location:275 → 355

OmpH; Outer membrane protein (OmpH-like)