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    otogl2.L otogelin L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 398539, updated on 27-Dec-2024

    Summary

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    Official Symbol
    otogl2.L
    Official Full Name
    otogelin L homeolog
    Primary source
    Xenbase:XB-GENE-6256047
    Locus tag
    XELAEV_18036111mg
    See related
    EnsemblRapid:ENSXLAG00005025008 AllianceGenome:Xenbase:XB-GENE-6256047
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    otgn; otog; mlemp; xep-1; otogl2.S
    Summary
    Predicted to enable alpha-L-arabinofuranosidase activity. Predicted to act upstream of or within L-arabinose metabolic process. Is expressed in dermal system and ectoderm. [provided by Alliance of Genome Resources, Dec 2024]
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See otogl2.L in Genome Data Viewer
    Location:
    chromosome: 7L
    Exon count:
    76
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7L NC_054383.1 (118823644..118875801, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7L NC_030736.1 (108277338..108329640, complement)

    Chromosome 7L - NC_054383.1Genomic Context describing neighboring genes Neighboring gene fms related tyrosine kinase 3 ligand L homeolog Neighboring gene excitatory amino acid transporter 2 Neighboring gene trans-1,2-dihydrobenzene-1,2-diol dehydrogenase like L homeolog Neighboring gene TUB like protein 2 L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables alpha-L-arabinofuranosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within L-arabinose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    otogelin L homeolog
    Names
    epidermal protein
    otogelin-like 2 L homeolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001089059.1 → NP_001082528.1  otogelin L homeolog precursor

      See identical proteins and their annotated locations for NP_001082528.1

      Status: PROVISIONAL

      Source sequence(s)
      BC076719
      UniProtKB/TrEMBL
      A0A974CGZ8, Q6DFL6
      Related
      ENSXLAP00005077059.1, ENSXLAT00005078651.1
      Conserved Domains (7) summary
      pfam00094
      Location:383 → 531
      VWD; von Willebrand factor type D domain
      pfam01826
      Location:742 → 801
      TIL; Trypsin Inhibitor like cysteine rich domain
      pfam08742
      Location:1018 → 1087
      C8; C8 domain
      pfam16009
      Location:152 → 327
      DUF4779; Domain of unknown function (DUF4779)
      pfam16228
      Location:153 → 313
      DUF4887; Domain of unknown function (DUF4887)
      cl02516
      Location:831 → 975
      VWD; von Willebrand factor type D domain
      cl21545
      Location:2295 → 2377
      GHB_like; Glycoprotein hormone beta chain homologues

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054383.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      118823644..118875801 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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