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    uncharacterized protein [ Saccharomyces cerevisiae S288C ]

    Gene ID: 1466447, updated on 9-Dec-2024

    Summary

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    Official Full Name
    uncharacterized protein
    Primary source
    SGD:S000028534
    Locus tag
    YBR196C-A
    See related
    AllianceGenome:SGD:S000028534; FungiDB:YBR196C-A; VEuPathDB:YBR196C-A
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Located in endoplasmic reticulum membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    Location:
    chromosome: II
    Exon count:
    1
    Sequence:
    Chromosome: II; NC_001134.8 (614024..614173, complement)

    Chromosome II - NC_001134.8Genomic Context describing neighboring genes Neighboring gene Msi1p Neighboring gene glucose-6-phosphate isomerase Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001134.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences. Vakirlis N, et al. Nat Commun, 2020 Feb 7. PMID 32034123, Free PMC Article
    2. Functional genomics of genes with small open reading frames (sORFs) in S. cerevisiae. Kastenmayer JP, et al. Genome Res, 2006 Mar. PMID 16510898, Free PMC Article
    3. Sec66-Dependent Regulation of Yeast Spindle-Pole Body Duplication Through Pom152. Katta SS, et al. Genetics, 2015 Dec. PMID 26510791, Free PMC Article
    4. Systematic discovery of new genes in the Saccharomyces cerevisiae genome. Kessler MM, et al. Genome Res, 2003 Feb. PMID 12566404, Free PMC Article
    5. Pex35 is a regulator of peroxisome abundance. Yofe I, et al. J Cell Sci, 2017 Feb 15. PMID 28049721, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_878051.3
    • hypothetical protein; identified by fungal homology and RT-PCR; ORF emerged de novo in thymine-rich ancestral non-genic region, accumulated substantial changes under positive selection, and progressively increased its transmembrane propensity to give rise to a protein that integrates into the endoplasmic reticulum (ER) membrane while retaining potential for adaptive change

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001134.8 Reference assembly

      Range
      614024..614173 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001184541.3 → NP_878051.3  TPA: uncharacterized protein YBR196C-A [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_878051.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VQJ1, Q3E820
      UniProtKB/TrEMBL
      A6ZLD7, B3LMW5, C7GKF6, D3UEU1, G2W9J8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3E820.1

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