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    PIB1 phosphatidylinositol-3-phosphate-binding ubiquitin-protein ligase [ Saccharomyces cerevisiae S288C ]

    Gene ID: 851908, updated on 9-Dec-2024

    Summary

    Official Symbol
    PIB1
    Official Full Name
    phosphatidylinositol-3-phosphate-binding ubiquitin-protein ligase
    Primary source
    SGD:S000002721
    Locus tag
    YDR313C
    See related
    AllianceGenome:SGD:S000002721; FungiDB:YDR313C; VEuPathDB:YDR313C
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Enables phosphatidylinositol-3-phosphate binding activity and ubiquitin-protein transferase activity. Involved in several processes, including negative regulation of gluconeogenesis; protein ubiquitination; and regulation of protein stability. Located in fungal-type vacuole membrane and late endosome. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See PIB1 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    1
    Sequence:
    Chromosome: IV; NC_001136.10 (1089219..1090079, complement)

    Chromosome IV - NC_001136.10Genomic Context describing neighboring genes Neighboring gene TFIIH/NER complex subunit TFB1 Neighboring gene rRNA-binding ribosome biosynthesis protein Neighboring gene Rad34p Neighboring gene inositol pentakisphosphate 2-kinase

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables phosphatidylinositol-3-phosphate binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables phosphatidylinositol-3-phosphate binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables ubiquitin-protein transferase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables zinc ion binding RCA
    inferred from Reviewed Computational Analysis
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of gluconeogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in protein ubiquitination IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in protein ubiquitination IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of protein catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of protein stability IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in bounding membrane of organelle IEA
    Inferred from Electronic Annotation
    more info
     
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in endosome membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in fungal-type vacuole membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in late endosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in vacuolar membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in vacuole IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    phosphatidylinositol-3-phosphate-binding ubiquitin-protein ligase
    NP_010599.1
    • RING-type ubiquitin ligase of the endosomal and vacuolar membranes; binds phosphatidylinositol 3-phosphate; contains a FYVE finger domain

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001136.10 Reference assembly

      Range
      1089219..1090079 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001180621.1NP_010599.1  TPA: phosphatidylinositol-3-phosphate-binding ubiquitin-protein ligase [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_010599.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VSU2, Q06651, Q6Q5S5
      UniProtKB/TrEMBL
      A6ZYR1, B3LFY3, N1PAH6
      Conserved Domains (3) summary
      smart00064
      Location:1289
      FYVE; Protein present in Fab1, YOTB, Vac1, and EEA1
      cd16489
      Location:224260
      mRING-CH-C4HC2H_ZNRF; Modified RING-CH finger, H2 subclass (C4HC2H-type), found in the ZNRF family
      pfam15926
      Location:94198
      RNF220; E3 ubiquitin-protein ligase RNF220