U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    fixX putative ferredoxin FixX [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948590, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    fixX
    Official Full Name
    putative ferredoxin FixX
    Primary source
    ECOCYC:EG11565
    Locus tag
    b0044
    See related
    ASAP:ABE-0000151
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0045; yaaT
    Summary
    The fix operon is expressed with the adjacent cai operon, suggesting that the fix operon may also be involved in anaerobic metabolism of carnitine . [More information is available at EcoCyc: EG11565].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (45463..45750)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative electron transfer flavoprotein FixA Neighboring gene putative electron transfer flavoprotein FixB Neighboring gene putative oxidoreductase FixC Neighboring gene putative transporter YaaU Neighboring gene regulator of KefC-mediated potassium transport and quinone oxidoreductase Neighboring gene K(+) : H(+) antiporter KefC

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The distance between Escherichia coli genes is related to gene expression levels. Eyre-Walker A. J Bacteriol, 1995 Sep. PMID 7665529, Free PMC Article
    2. Regulation of the carnitine pathway in Escherichia coli: investigation of the cai-fix divergent promoter region. Buchet A, et al. J Bacteriol, 1998 May. PMID 9573142, Free PMC Article
    3. Systematic sequencing of the Escherichia coli genome: analysis of the 0-2.4 min region. Yura T, et al. Nucleic Acids Res, 1992 Jul 11. PMID 1630901, Free PMC Article
    4. The fix Escherichia coli region contains four genes related to carnitine metabolism. Eichler K, et al. J Basic Microbiol, 1995. PMID 7473063
    5. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables 4 iron, 4 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    putative ferredoxin FixX

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      45463..45750
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414586.1 putative ferredoxin FixX [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414586.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376U2H2
      Conserved Domains (1) summary
      PRK15449
      Location:1 → 95
      PRK15449; ferredoxin-like protein FixX; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.