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    ybiW putative pyruvate formate lyase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945444, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ybiW
    Official Full Name
    putative pyruvate formate lyase
    Primary source
    ECOCYC:G6426
    Locus tag
    b0823
    See related
    ASAP:ABE-0002810
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0813; pflF
    Summary
    AFMB Structural Genomics target Number 86 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG13328].
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    Genomic context

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    Sequence:
    NC_000913.3 (860174..862606, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF1479 domain-containing protein YbiU Neighboring gene sugar phosphatase YbiV Neighboring gene putative pyruvate formate-lyase activating enzyme YbiY Neighboring gene fructose-6-phosphate aldolase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article
    2. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    3. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    4. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative pyruvate formate lyase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      860174..862606 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415344.1 putative pyruvate formate lyase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415344.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6M9WSA4
      Conserved Domains (1) summary
      TIGR01774
      Location:8 → 810
      PFL2-3; glycyl radical enzyme, PFL2/glycerol dehydratase family
    Nucleotide Protein
    Heading Accession and Version

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