U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    dgcI putative diguanylate cyclase DgcI [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945463, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    dgcI
    Official Full Name
    putative diguanylate cyclase DgcI
    Primary source
    ECOCYC:G6434
    Locus tag
    b0834
    See related
    ASAP:ABE-0002841
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0824; yliF
    Summary
    YliF has a C-terminal diguanylate cyclase GGDEF domain. [More information is available at EcoGene: EG13477]. YliF was found, in random transposon mutagenesis studies, to be required for growth in optimum (rich medium at 37 degrees C) growth conditions but not under cold conditions (15 degrees C) or in minimal medium . [More information is available at EcoCyc: G6434].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (875335..876663)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene glutathione ABC transporter membrane subunit GsiD Neighboring gene putative c-di-GMP phosphodiesterase PdeI Neighboring gene ribosomal protein S12 methylthiotransferase RimO Neighboring gene regulator of biofilm formation

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables diguanylate cyclase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables diguanylate cyclase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell adhesion involved in single-species biofilm formation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in negative regulation of bacterial-type flagellum-dependent cell motility IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    putative diguanylate cyclase DgcI

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      875335..876663
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415355.1 putative diguanylate cyclase DgcI [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415355.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7E771
      Conserved Domains (2) summary
      smart00267
      Location:295 → 441
      GGDEF; diguanylate cyclase
      pfam17156
      Location:26 → 229
      GAPES2; Gammaproteobacterial periplasmic sensor domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.