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    ybjL putative transport protein YbjL [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945474, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ybjL
    Official Full Name
    putative transport protein YbjL
    Primary source
    ECOCYC:G6445
    Locus tag
    b0847
    See related
    ASAP:ABE-0002887
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0838
    Summary
    Predicted to be in the ST(3) structural class based on hydropathy profile (Lolkema, 2003), but is was not placed in the very similar IT superfamily in a study using phylogenetic methods (Prakash, 2003). [More information is available at EcoGene: EG13681].
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    Genomic context

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    Sequence:
    NC_000913.3 (888134..889819, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene RcdA Neighboring gene ncRNA Neighboring gene putative inner membrane protein Neighboring gene reduced glutaredoxin 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Domain structure and pore loops in the 2-hydroxycarboxylate transporter family. Lolkema JS. J Mol Microbiol Biotechnol, 2006. PMID 17114896
    2. Sequence and hydropathy profile analysis of two classes of secondary transporters. Lolkema JS, et al. Mol Membr Biol, 2005 May-Jun. PMID 16096261
    3. The ion transporter superfamily. Prakash S, et al. Biochim Biophys Acta, 2003 Dec 3. PMID 14643936
    4. Classification of 29 families of secondary transport proteins into a single structural class using hydropathy profile analysis. Lolkema JS, et al. J Mol Biol, 2003 Apr 11. PMID 12662917
    5. Biochemical characterization of NfsA, the Escherichia coli major nitroreductase exhibiting a high amino acid sequence homology to Frp, a Vibrio harveyi flavin oxidoreductase. Zenno S, et al. J Bacteriol, 1996 Aug. PMID 8755878, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables monoatomic cation transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in monoatomic cation transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in potassium ion transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative transport protein YbjL

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      888134..889819 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415368.1 putative transport protein YbjL [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415368.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6C9Q8S5, A0A7A6U2W8, A0A8T5YG13
      Conserved Domains (1) summary
      PRK04972
      Location:1 → 558
      PRK04972; putative transporter; Provisional
    Nucleotide Protein
    Heading Accession and Version

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