U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ydeM putative anaerobic sulfatase maturation enzyme YdeM [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945981, updated on 17-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ydeM
    Official Full Name
    putative anaerobic sulfatase maturation enzyme YdeM
    Primary source
    ECOCYC:G6787
    Locus tag
    b1497
    See related
    ASAP:ABE-0004986
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1491
    Summary
    YdeM is a member of the anaerobic sulfatase maturation enzyme subfamily of the Radical SAM superfamily of enzymes . [More information is available at EcoCyc: G6787].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (1579633..1580790, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative TonB-dependent receptor YddB Neighboring gene ABC transporter family protein YddA Neighboring gene protein YneP Neighboring gene putative sulfatase YdeN Neighboring gene DNA-binding transcriptional dual regulator YdeO

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A novel mucin-sulphatase activity found in Burkholderia cepacia and Pseudomonas aeruginosa. Jansen HJ, et al. J Med Microbiol, 1999 Jun. PMID 10359304
    2. Sulfatases: structure, mechanism, biological activity, inhibition, and synthetic utility. Hanson SR, et al. Angew Chem Int Ed Engl, 2004 Nov 5. PMID 15493058
    3. First evidences for a third sulfatase maturation system in prokaryotes from E. coli aslB and ydeM deletion mutants. Benjdia A, et al. FEBS Lett, 2007 Mar 6. PMID 17303125
    4. Computational analysis of bacterial sulfatases and their modifying enzymes. Schirmer A, et al. Chem Biol, 1998 Aug. PMID 9710560
    5. Temporal gene-expression in Escherichia coli K-12 biofilms. Domka J, et al. Environ Microbiol, 2007 Feb. PMID 17222132

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Cys-type sulfatases can mature only in aerobic conditions, and knocking-out of aslB, ydeM and yidF does not impair Cys-type sulfatase maturation.
      Title: First evidences for a third sulfatase maturation system in prokaryotes from E. coli aslB and ydeM deletion mutants.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables 4 iron, 4 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage response IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within protein maturation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    putative anaerobic sulfatase maturation enzyme YdeM

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1579633..1580790 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416014.4 putative anaerobic sulfatase maturation enzyme YdeM [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416014.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8T5ZAB5
      Conserved Domains (1) summary
      TIGR03942
      Location:2 → 365
      sulfatase_rSAM; anaerobic sulfatase-maturating enzyme
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.