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    ydfZ putative selenoprotein YdfZ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948796, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydfZ
    Official Full Name
    putative selenoprotein YdfZ
    Primary source
    ECOCYC:G6815
    Locus tag
    b1541
    See related
    ASAP:ABE-0005147
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1534
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    Genomic context

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    Sequence:
    NC_000913.3 (1629215..1629418)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene 3-hydroxy acid dehydrogenase YdfG Neighboring gene DNA-binding transcriptional repressor RspR Neighboring gene putative oxidoreductase YdfI Neighboring gene putative transporter YdfJ

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function. Kang Y, et al. J Bacteriol, 2005 Feb. PMID 15659690, Free PMC Article
    2. Direct detection of potential selenium delivery proteins by using an Escherichia coli strain unable to incorporate selenium from selenite into proteins. Lacourciere GM, et al. Proc Natl Acad Sci U S A, 2002 Jul 9. PMID 12084818, Free PMC Article
    3. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article
    4. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. N-terminus verified by Edman degradation on mature peptide
      Title: Direct detection of potential selenium delivery proteins by using an Escherichia coli strain unable to incorporate selenium from selenite into proteins.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative selenoprotein YdfZ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1629215..1629418
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416059.1 putative selenoprotein YdfZ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416059.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2W6NSF2, A0A2X1KKM8
      Conserved Domains (1) summary
      TIGR03318
      Location:1 → 65
      YdfZ_fam; putative selenium-binding protein YdfZ
    Nucleotide Protein
    Heading Accession and Version

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