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    ypjD cytochrome c assembly family protein [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947098, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ypjD
    Official Full Name
    cytochrome c assembly family protein
    Primary source
    ECOCYC:G7355
    Locus tag
    b2611
    See related
    ASAP:ABE-0008591
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2608
    Summary
    The Salmonella ortholog was named as corE in Genbank AF130857. [More information is available at EcoGene: EG14226]. YpjD is an inner membrane protein with eight predicted transmembrane domains. [More information is available at EcoCyc: G7355].
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    Genomic context

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    Sequence:
    NC_000913.3 (2747962..2748753)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene 30S ribosomal subunit protein S16 Neighboring gene signal recognition particle protein component Neighboring gene UPF0053 family inner membrane protein YfjD Neighboring gene nucleotide exchange factor GrpE

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
    2. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
    3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cytochrome complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    cytochrome c assembly family protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2747962..2748753
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417102.4 cytochrome c assembly family protein [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417102.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A418GRW6
      Conserved Domains (1) summary
      COG4137
      Location:1 → 263
      YpjD; ABC-type uncharacterized transport system, permease component [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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